Zhi-Ping Liu

Orcid: 0000-0002-2437-3536

According to our database1, Zhi-Ping Liu authored at least 59 papers between 2006 and 2025.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2025
GCNPMDA: Human microbe-disease association prediction by hierarchical graph convolutional network with layer attention.
Biomed. Signal Process. Control., 2025

2024
Network Activity Evaluation Reveals Significant Gene Regulatory Architectures During SARS-CoV-2 Viral Infection From Dynamic scRNA-seq Data.
IEEE J. Biomed. Health Informatics, April, 2024

TopMarker: Computational screening biomarkers of hepatocellular carcinoma from transcriptome and interactome based on differential network topological parameters.
Comput. Biol. Chem., 2024

LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data.
Briefings Bioinform., 2024

Predicting Drug-Target Affinity Using Protein Pocket and Graph Convolution Network.
Proceedings of the Bioinformatics Research and Applications - 20th International Symposium, 2024

2023
Biomarker discovery from high-throughput data by connected network-constrained support vector machine.
Expert Syst. Appl., September, 2023

ActivePPI: quantifying protein-protein interaction network activity with Markov random fields.
Bioinform., September, 2023

Editorial: Insights in integrative bioinformatics-2021.
Frontiers Bioinform., May, 2023

LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data.
Bioinform., May, 2023

Quantum Neural Network for Quantum Neural Computing.
CoRR, 2023

MOFNet: A Deep Learning Framework of Integrating Multi-omics Data for Breast Cancer Diagnosis.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

Multi-objective Optimization-Based Approach for Detection of Breast Cancer Biomarkers.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

2022
Evaluating Gene Regulatory Network Activity From Dynamic Expression Data by Regularized Constraint Programming.
IEEE J. Biomed. Health Informatics, 2022

Discovering biomarkers of hepatocellular carcinoma from single-cell RNA sequencing data by cooperative games on gene regulatory network.
J. Comput. Sci., 2022

Predicting Box-Office Markets with Machine Learning Methods.
Entropy, 2022

Automated machine learning for secure key rate in discrete-modulated continuous-variable quantum key distribution.
CoRR, 2022

Predicting multiple types of MicroRNA-disease associations based on tensor factorization and label propagation.
Comput. Biol. Medicine, 2022

Robust biomarker screening from gene expression data by stable machine learning-recursive feature elimination methods.
Comput. Biol. Chem., 2022

Identifying biomarkers for breast cancer by gene regulatory network rewiring.
BMC Bioinform., 2022

PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning.
Bioinform., 2022

Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data.
Bioinform., 2022

A connected network-regularized logistic regression model for feature selection.
Appl. Intell., 2022

A Comparison Study of Predicting lncRNA-Protein Interactions via Representative Network Embedding Methods.
Proceedings of the Intelligent Computing Theories and Application, 2022

2021
Prioritizing Type 2 Diabetes Genes by Weighted PageRank on Bilayer Heterogeneous Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Prediction of cardiovascular diseases by integrating multi-modal features with machine learning methods.
Biomed. Signal Process. Control., 2021

Inference of Gene Regulatory Network from Time Series Expression Data by Combining Local Geometric Similarity and Multivariate Regression.
Proceedings of the Intelligent Computing Theories and Application, 2021

A Semi-Supervised Learning Algorithm for Predicting MiRNA-Disease Association.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
Network-based prioritization of cancer genes by integrative ranks from multi-omics data.
Comput. Biol. Medicine, 2020

iNOA: An Improvement of Network Ontology Analysis with GO Semantic Similarity.
Proceedings of the ICBIP 2020: 5th International Conference on Biomedical Signal and Image Processing, 2020

2019
Identifying Cancer Biomarkers from High-Throughput RNA Sequencing Data by Machine Learning.
Proceedings of the Intelligent Computing Theories and Application, 2019

2018
Towards precise reconstruction of gene regulatory networks by data integration.
Quant. Biol., 2018

Detecting pathway biomarkers of diabetic progression with differential entropy.
J. Biomed. Informatics, 2018

2017
Multi-dimensional data representation using linear tensor coding.
IET Image Process., 2017

Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.
BMC Bioinform., 2017

2016
Prediction of protein-RNA interactions using sequence and structure descriptors.
Neurocomputing, 2016

CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.
BMC Bioinform., 2016

2015
Identifying overlapping communities in social networks using multi-scale local information expansion.
CoRR, 2015

Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity.
BMC Bioinform., 2015

RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.
Database J. Biol. Databases Curation, 2015

2014
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection.
BMC Bioinform., 2014

2013
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer.
J. Am. Medical Informatics Assoc., 2013

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.
Bioinform., 2013

2012
Identifying disease genes and module biomarkers by differential interactions.
J. Am. Medical Informatics Assoc., 2012

Multiple-resource and multiple-depot emergency response problem considering secondary disasters.
Expert Syst. Appl., 2012

A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol., 2012

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
BMC Bioinform., 2012

Identifying dysregulated pathways in cancers from pathway interaction networks.
BMC Bioinform., 2012

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
Bioinform., 2012

Construction and analysis of genome-wide SNP networks.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Syst. Biol., 2011

Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis.
Proceedings of the Bio-Inspired Computing and Applications, 2011

2010
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Syst. Biol., 2010

Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinform., 2010

Inferring gene regulatory networks from expression data with prior knowledge by linear programming.
Proceedings of the International Conference on Machine Learning and Cybernetics, 2010

2009
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease.
Proceedings of the IEEE International Conference on Systems, 2009

2008
Protein cavity clustering based on community structure of pocket similarity network.
Int. J. Bioinform. Res. Appl., 2008

2007
Predicting gene ontology functions from protein's regional surface structures.
BMC Bioinform., 2007

2006
Short-Time Traffic Flow Forecasting Based on Projection Pursuit Auto-Regression.
Proceedings of the First International Conference on Innovative Computing, Information and Control (ICICIC 2006), 30 August, 2006


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