Adam A. Margolin

According to our database, Adam A. Margolin authored at least 23 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

svpluscnv: analysis and visualization of complex structural variation data.

Gonzalo López, Laura E. Egolf, Federico M. Giorgi, Sharon J. Diskin, Adam A. Margolin

Bioinform., 2021

2018

Germline contamination and leakage in whole genome somatic single nucleotide variant detection.

Dorota H. Sendorek, Cristian Caloian, Kyle Ellrott, J. Christopher Bare, Takafumi N. Yamaguchi, Adam D. Ewing, Kathleen E. Houlahan, Thea C. Norman, Adam A. Margolin, Joshua M. Stuart, Paul C. Boutros

BMC Bioinform., 2018

Valection: design optimization for validation and verification studies.

Christopher I Cooper, Delia Yao, Dorota H. Sendorek, Takafumi N. Yamaguchi, Christine P'ng, Kathleen E. Houlahan, Cristian Caloian, Michael Fraser, Kyle Ellrott, Adam A. Margolin, Robert G. Bristow, Joshua M. Stuart, Paul C. Boutros

BMC Bioinform., 2018

SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks.

Erik A. Burlingame, Adam A. Margolin, Joe W. Gray, Young Hwan Chang

Proceedings of the Medical Imaging 2018: Digital Pathology, 2018

2017

Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies.

Olga Nikolova, Russell Moser, Christopher Kemp, Mehmet Gönen, Adam A. Margolin

Bioinform., 2017

Integrative analysis on histopathological image for identifying cellular heterogeneity.

Young Hwan Chang, Guillaume Thibault, Brett Johnson, Adam A. Margolin, Joe W. Gray

Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

Breast cancer histopathology image analysis pipeline for tumor purity estimation.

Vahid Azimi, Young Hwan Chang, Guillaume Thibault, Jaclyn Smith, Takahiro Tsujikawa, Benjamin Kukull, Bradden Jensen, Christopher Corless, Adam A. Margolin, Joe W. Gray

Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Multiplexed immunohistochemistry image analysis using sparse coding.

Young Hwan Chang, Takahiro Tsujikawa, Adam A. Margolin, Lisa M. Coussens, Joe W. Gray

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Deep learning based Nucleus Classification in pancreas histological images.

Young Hwan Chang, Guillaume Thibault, Owen Madin, Vahid Azimi, Cole Meyers, Brett Johnson, Jason Link, Adam A. Margolin, Joe W. Gray

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

2016

Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics.

Young Hwan Chang, Guillaume Thibault, Vahid Azimi, Brett Johnson, Danielle Jorgens, Jason Link, Adam A. Margolin, Joe W. Gray

Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

2015

The NIH BD2K center for big data in translational genomics.

Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler

J. Am. Medical Informatics Assoc., 2015

Stepwise Group Sparse Regression (SGSR): Gene-Set-Based Pharmacogenomic Predictive Models with Stepwise Selection of Functional Priors.

In Sock Jang, Rodrigo Dienstmann, Adam A. Margolin, Justin Guinney

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

Session Introduction.

Søren Brunak, Francisco M. de la Vega, Adam A. Margolin, Benjamin J. Raphael, Gunnar Rätsch, Joshua M. Stuart

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

Drug susceptibility prediction against a panel of drugs using kernelized Bayesian multitask learning.

Mehmet Gönen, Adam A. Margolin

Bioinform., 2014

The Stream Algorithm: Computationally Efficient Ridge-Regression via Bayesian Model Averaging, and Applications to Pharmacogenomic Prediction of Cancer Cell Line Sensitivity.

Elias Chaibub Neto, In Sock Jang, Stephen H. Friend, Adam A. Margolin

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Systematic Assessment of Analytical Methods for Drug Sensitivity Prediction from Cancer Cell Line Data.

In Sock Jang, Elias Chaibub Neto, Justin Guinney, Stephen H. Friend, Adam A. Margolin

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Localized Data Fusion for Kernel k-Means Clustering with Application to Cancer Biology.

Mehmet Gönen, Adam A. Margolin

Proceedings of the Advances in Neural Information Processing Systems 27: Annual Conference on Neural Information Processing Systems 2014, 2014

Kernelized Bayesian Transfer Learning.

Mehmet Gönen, Adam A. Margolin

Proceedings of the Twenty-Eighth AAAI Conference on Artificial Intelligence, 2014

2013

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.

Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A. Logsdon, Gaurav Pandey, Benjamin A. Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H. Mecham, Oscar M. Rueda, Jorg Tost, Christina Curtis, Mariano J. Alvarez, Vessela N. Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H. Friend, Trey Ideker, Eric E. Schadt, Gustavo A. Stolovitzky, Adam A. Margolin

PLoS Comput. Biol., 2013

2007

ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding.

Adam A. Margolin, Teresa Palomero, Adolfo A. Ferrando, Andrea Califano, Gustavo Stolovitzky

BMC Bioinform., 2007

2006

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context.

Adam A. Margolin, Ilya Nemenman, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, Andrea Califano

BMC Bioinform., 2006

Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes.

Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano

Proceedings of the Research in Computational Molecular Biology, 2006

2005

CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.

Adam A. Margolin, Joel Greshock, Tara L. Naylor, Yael Mosse, John M. Maris, Graham Bignell, Alexander I. Saeed, John Quackenbush, Barbara L. Weber

Bioinform., 2005