Samuel Aparicio

According to our database, Samuel Aparicio authored at least 9 papers between 2010 and 2025.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2025

CN-SBM: Categorical Block Modelling For Primary and Residual Copy Number Variation.

Kevin Lam, William Daniels, J. Maxwell Douglas, Daniel Lai, Samuel Aparicio, Benjamin Bloem-Reddy, Yongjin Park

Proceedings of the 20th Machine Learning in Computational Biology (MLCB), 2025

2024

ESQmodel: biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.

Eric Lee, Dongkyu Lee, Wayne Fan, Andrew Lytle, Yuxiang Fu, David W. Scott, Christian Steidl, Samuel Aparicio, Andrew Roth

Bioinform., 2024

2020

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data.

Camila P. E. de Souza, Mirela Andronescu, Tehmina Masud, Farhia Kabeer, Justina Biele, Emma Laks, Daniel Lai, Patricia Ye, Jazmine Brimhall, Beixi Wang, Edmund Su, Tony Hui, Qi Cao, Marcus Wong, Michelle Moksa, Richard A. Moore, Martin Hirst, Samuel Aparicio, Sohrab P. Shah

PLoS Comput. Biol., 2020

2019

12 Grand Challenges in Single-Cell Data Science.

David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

PeerJ Prepr., 2019

Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups.

Oscar M. Rueda, Stephen John Sammut, José A. Seoane, Suet-Feung Chin, Jennifer L. Caswell-Jin, Maurizio Callari, Rajbir Nath Batra, Bernard Pereira, Alejandra Bruna, H. Raza Ali, Elena Provenzano, Bin Liu, Michelle Parisien, Cheryl Gillett, Steven McKinney, Andrew R. Green, Leigh Murphy, Arnie Purushotham, Ian O. Ellis, Paul D. P. Pharoah, Cristina Rueda, Samuel Aparicio, Carlos Caldas, Christina Curtis

Nat., 2019

2013

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.

Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A. Logsdon, Gaurav Pandey, Benjamin A. Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H. Mecham, Oscar M. Rueda, Jorg Tost, Christina Curtis, Mariano J. Alvarez, Vessela N. Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H. Friend, Trey Ideker, Eric E. Schadt, Gustavo A. Stolovitzky, Adam A. Margolin

PLoS Comput. Biol., 2013

2012

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.

Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah

Bioinform., 2012

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.

Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah

Bioinform., 2012

2010

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors.

Rodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah

Bioinform., 2010