Adam M. Novak

According to our database, Adam M. Novak authored at least 13 papers between 2015 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

Efficient dynamic variation graphs.

Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison

Bioinform., 2021

2020

Distance indexing and seed clustering in sequence graphs.

Xian Chang, Jordan Eizenga, Adam M. Novak, Jouni Sirén, Benedict Paten

Bioinform., 2020

2019

Sequence tube maps: making graph genomes intuitive to commuters.

Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino

Bioinform., 2019

2018

Superbubbles, Ultrabubbles, and Cacti.

Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey

J. Comput. Biol., 2018

A Flow Procedure for Linearization of Genome Sequence Graphs.

David Haussler, Maciej Smuga-Otto, Jordan M. Eizenga, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov

J. Comput. Biol., 2018

A graph-based approach to diploid genome assembly.

Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall

Bioinform., 2018

Haplotype-aware graph indexes.

Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin

Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018

2017

Infrastructure for Scalable Analysis of Genomic Variation.

Adam M. Novak

PhD thesis, 2017

Superbubbles, Ultrabubbles and Cacti.

Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey

Proceedings of the Research in Computational Molecular Biology, 2017

A Flow Procedure for the Linearization of Genome Sequence Graphs.

David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov

Proceedings of the Research in Computational Molecular Biology, 2017

2016

A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications.

Adam M. Novak, Erik Garrison, Benedict Paten

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

2015

The NIH BD2K center for big data in translational genomics.

Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler

J. Am. Medical Informatics Assoc., 2015

Canonical, stable, general mapping using context schemes.

Adam M. Novak, Yohei Rosen, David Haussler, Benedict Paten

Bioinform., 2015