Tobias Marschall

According to our database1, Tobias Marschall authored at least 37 papers between 2006 and 2019.

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Bibliography

2019
12 Grand Challenges in Single-Cell Data Science.
PeerJ PrePrints, 2019

Bit-parallel sequence-to-graph alignment.
Bioinformatics, 2019

Fully-sensitive seed finding in sequence graphs using a hybrid index.
Bioinformatics, 2019

2018
Strand-seq enables reliable separation of long reads by chromosome via expectation maximization.
Bioinformatics, 2018

A graph-based approach to diploid genome assembly.
Bioinformatics, 2018

Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.
Proceedings of the Research in Computational Molecular Biology, 2018

2017
Genotyping inversions and tandem duplications.
Bioinformatics, 2017

A Guided Tour to Computational Haplotyping.
Proceedings of the Unveiling Dynamics and Complexity, 2017

2016
Eliminating Blind Spots in Genetic Variant Discovery.
ERCIM News, 2016

Representing Pattern Matching Algorithms by Polynomial-Size Automata.
CoRR, 2016

PWHATSHAP: efficient haplotyping for future generation sequencing.
BMC Bioinformatics, 2016

Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.
Bioinformatics, 2016

Read-based phasing of related individuals.
Bioinformatics, 2016

2015
Next generation cluster editing.
PeerJ PrePrints, 2015

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
Journal of Computational Biology, 2015

Genome sequence analysis with MonetDB - A case study on Ebola virus diversity.
Datenbank-Spektrum, 2015

Repeat- and error-aware comparison of deletions.
Bioinformatics, 2015

2014
Viral Quasispecies Assembly via Maximal Clique Enumeration.
PLoS Computational Biology, 2014

WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads.
Proceedings of the Research in Computational Molecular Biology, 2014

High-Performance Haplotype Assembly.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

2013
Mapping proteins in the presence of paralogs using units of coevolution.
BMC Bioinformatics, 2013

Discovering motifs that induce sequencing errors.
BMC Bioinformatics, 2013

MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels.
Bioinformatics, 2013

2012
Probabilistic Arithmetic Automata and Their Applications.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

CLEVER: clique-enumerating variant finder.
Bioinformatics, 2012

Solving the Minimum String Cover Problem.
Proceedings of the 14th Meeting on Algorithm Engineering & Experiments, 2012

2011
Algorithms and statistical methods for exact motif discovery.
PhD thesis, 2011

Construction of minimal deterministic finite automata from biological motifs.
Theor. Comput. Sci., 2011

An Algorithm to Compute the Character Access Count Distribution for Pattern Matching Algorithms.
Algorithms, 2011

2010
Exact Analysis of Pattern Matching Algorithms with Probabilistic Arithmetic Automata
CoRR, 2010

Construction of minimal DFAs from biological motifs
CoRR, 2010

Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Exact Analysis of Horspool's and Sunday's Pattern Matching Algorithms with Probabilistic Arithmetic Automata.
Proceedings of the Language and Automata Theory and Applications, 2010

2009
Efficient exact motif discovery.
Bioinformatics, 2009

Modeling evolutionary fitness for DNA motif discovery.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

2008
Probabilistic Arithmetic Automata and Their Application to Pattern Matching Statistics.
Proceedings of the Combinatorial Pattern Matching, 19th Annual Symposium, 2008

2006
Automatic Detection of Song Changes in Music Mixes Using Stochastic Models.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006


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