Andre Franke

According to our database, Andre Franke authored at least 19 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Pathogen detection in RNA-seq data with Pathonoia.

Anna-Maria Liebhoff, Kevin Menden, Alena Laschtowitz, Andre Franke, Christoph Schramm, Stefan Bonn

BMC Bioinform., December, 2023

2022

<tt>MAGScoT</tt>: a fast, lightweight and accurate bin-refinement tool.

Malte Rühlemann, Eike Matthias Wacker, David Ellinghaus, Andre Franke

Bioinform., December, 2022

2021

Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data.

Hesham ElAbd, Frauke Degenhardt, Tomás Koudelka, Ann-Kristin Kamps, Andreas Tholey, Petra Bacher, Tobias L. Lenz, Andre Franke, Mareike Wendorff

BMC Bioinform., 2021

2020

A structural variation reference for medical and population genetics.

Ryan L. Collins, Harrison Brand, Konrad J. Karczewski, Xuefang Zhao, Jessica Alföldi, Laurent C. Francioli, Amit V. Khera, Chelsea Lowther, Laura D. Gauthier, Harold Wang, Nicholas A. Watts, Matthew Solomonson, Alexander Baumann, Ruchi Munshi, Mark Walker, Christopher W. Whelan, Yongqing Huang, Ted Brookings, Ted Sharpe, Matthew R. Stone, Elise Valkanas, Jack Fu, Grace Tiao, Kristen M. Laricchia, Valentín Ruano-Rubio, Christine Stevens, Namrata Gupta, Caroline Cusick, Lauren Margolin, Irina M. Armean, Eric Banks, Louis Bergelson, Kristian Cibulskis, Kristen M. Connolly, Miguel Covarrubias, Beryl B. Cummings, Mark J. Daly, Stacey Donnelly, Yossi Farjoun, Steven Ferriera, Stacey Gabriel, Jeff Gentry, Thibault Jeandet, Diane Kaplan, Christopher Llanwarne, Eric V. Minikel, Benjamin M. Neale, Sam Novod, Anne H. O'Donnell-Luria, Nikelle Petrillo, Timothy Poterba, David Roazen, Andrea Saltzman, Kaitlin E. Samocha, Molly Schleicher, Cotton Seed, José Soto, Kathleen Tibbetts, Charlotte Tolonen, Christopher Vittal, Gordon Wade, Arcturus Wang, Qingbo Wang, James S. Ware, Ben Weisburd, Nicola Whiffin, Carlos A. Aguilar Salinas, Tariq Ahmad, Christine M. Albert, Diego Ardissino, Gil Atzmon, John Barnard, Laurent Beaugerie, Emelia J. Benjamin, Michael Boehnke, Lori L. Bonnycastle, Erwin P. Bottinger, Donald W. Bowden, Matthew J. Bown, John C. Chambers, Juliana C. Chan, Daniel Chasman, Judy Cho, Mina K. Chung, Bruce Cohen, Adolfo Correa, Dana Dabelea, Dawood Darbar, Ravindranath Duggirala, Josée Dupuis, Patrick T. Ellinor, Roberto Elosua, Jeanette Erdmann, Tõnu Esko, Martti Färkkilä, Jose Florez, Andre Franke, Gad Getz, Benjamin Glaser, Stephen J. Glatt, David Goldstein, Clicerio Gonzalez, Leif Groop, Christopher A. Haiman, Craig Hanis, Matthew Harms, Mikko Hiltunen, Matti M. Holi, Christina M. Hultman, Mikko Kallela, Jaakko Kaprio, Sekar Kathiresan, Bong-Jo Kim, Young Jin Kim, George Kirov, Jaspal Kooner, Seppo Koskinen, Harlan M. Krumholz, Subra Kugathasan, Soo Heon Kwak, Markku Laakso, Terho Lehtimäki, Ruth J. F. Loos, Steven A. Lubitz, Ronald C. W. Ma, Daniel G. MacArthur, Jaume Marrugat, Kari M. Mattila, Steven A. McCarroll, Mark I. McCarthy, Dermot McGovern, Ruth McPherson, James B. Meigs, Olle Melander, Andres Metspalu, Peter M. Nilsson, Michael C. O'Donovan, Dost Öngür, Lorena Orozco, Michael J. Owen, Colin N. A. Palmer, Aarno Palotie, Kyong Soo Park, Carlos Pato, Ann E. Pulver, Nazneen Rahman, Anne M. Remes, John D. Rioux, Samuli Ripatti, Dan M. Roden, Danish Saleheen, Veikko Salomaa, Nilesh J. Samani, Jeremiah Scharf, Heribert Schunkert, Moore B. Shoemaker, Pamela Sklar, Hilkka Soininen, Harry Sokol, Tim Spector, Patrick F. Sullivan, Jaana Suvisaari, E. Shyong Tai, Yik Ying Teo, Tuomi Tiinamaija, Ming Tsuang, Dan Turner, Teresa Tusie-Luna, Erkki Vartiainen, Hugh Watkins, Rinse K. Weersma, Maija Wessman, James G. Wilson, Ramnik J. Xavier, Kent D. Taylor, Henry J. Lin, Stephen S. Rich, Wendy S. Post, Yii-Der Ida Chen, Jerome I. Rotter, Chad Nusbaum, Anthony A. Philippakis, Eric S. Lander, Michael E. Talkowski

Nat., 2020

Identification of Biomarkers Controlling Cell Fate In Blood Cell Development.

Maryam Nazarieh, Volkhard Helms, Marc P. Hoeppner, Andre Franke

CoRR, 2020

Amino acid encoding for deep learning applications.

Hesham ElAbd, Yana Bromberg, Adrienne Hoarfrost, Tobias Lenz, Andre Franke, Mareike Wendorff

BMC Bioinform., 2020

2019

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11, 087 Clinical Isolates.

Valentina Galata, Cedric Christian Laczny, Christina Backes, Georg Hemmrich-Stanisak, Susanne Schmolke, Andre Franke, Eckart Meese, Mathias Herrmann, Lutz von Müller, Achim Plum, Rolf Müller, Cord Stähler, Andreas E. Posch, Andreas Keller

Genom. Proteom. Bioinform., 2019

2018

A high-resolution map of the human small non-coding transcriptome.

Tobias Fehlmann, Christina Backes, Julia Alles, Ulrike Fischer, Martin Hart, Fabian Kern, Hilde Langseth, Trine Rounge, Sinan Ugur Umu, Mustafa Kahraman, Thomas Laufer, Jan Haas, Cord Staehler, Nicole Ludwig, Matthias Hübenthal, Benjamin Meder, Andre Franke, Hans-Peter Lenhof, Eckart Meese, Andreas Keller

Bioinform., 2018

Comparing genome versus proteome-based identification of clinical bacterial isolates.

Valentina Galata, Christina Backes, Cedric Christian Laczny, Georg Hemmrich-Stanisak, Howard Li, Laura Smoot, Andreas E. Posch, Susanne Schmolke, Markus Bischoff, Lutz von Müller, Achim Plum, Andre Franke, Andreas Keller

Briefings Bioinform., 2018

2017

LitDB - Keeping Track of Research Papers From Your Institute Made Simple.

Jörn Bethune, Lars Kraemer, Ingo Thomsen, Andreas Keller, David Ellinghaus, Andre Franke

Source Code Biol. Medicine, 2017

Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.

Jens Christian Claussen, Jurgita Skieceviciene, Jun Wang, Philipp Rausch, Tom H. Karlsen, Wolfgang Lieb, John F. Baines, Andre Franke, Marc-Thorsten Hütt

PLoS Comput. Biol., 2017

Fine-mapping inflammatory bowel disease loci to single-variant resolution.

Hailiang Huang, Ming Fang, Luke Jostins, Masa Umicevic Mirkov, Gabrielle Boucher, Carl A. Anderson, Vibeke Andersen, Isabelle Cleynen, Adrian Cortes, François Crins, Mauro D'Amato, Valérie Deffontaine, Julia Dmitrieva, Elisa Docampo, Mahmoud Elansary, Kyle Kai-How Farh, Andre Franke, Ann-Stephan Gori, Philippe Goyette, Jonas Halfvarson, Talin Haritunians, Jo Knight, Ian C. Lawrance, Charlie W. Lees, Edouard Louis, Rob Mariman, Theo H. E. Meuwissen, Myriam Mni, Yukihide Momozawa, Miles Parkes, Sarah L. Spain, Emilie Théâtre, Gosia Trynka, Jack Satsangi, Suzanne van Sommeren, Severine Vermeire, Ramnik J. Xavier, Rinse K. Weersma, Richard H. Duerr, Christopher G. P. Mathew, John D. Rioux, Dermot P. B. McGovern, Judy H. Cho, Michel Georges, Mark J. Daly, Jeffrey C. Barrett

Nat., 2017

Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases.

Christian R. Bauer, Carolin Knecht, Christoph Fretter, Benjamin Baum, Sandra Jendrossek, Malte Rühlemann, Femke-Anouska Heinsen, Nadine Umbach, Bodo Grimbacher, Andre Franke, Wolfgang Lieb, Michael Krawczak, Marc-Thorsten Hütt, Ulrich Sax

Briefings Bioinform., 2017

2016

Haplotype synthesis analysis reveals functional variants underlying known genome-wide associated susceptibility loci.

André Lacour, David Ellinghaus, Stefan Schreiber, Andre Franke, Tim Becker

Bioinform., 2016

2015

OscARsWelt: A Collaborative Augmented Reality Game.

Anna Katharina Hebborn, Milan Dilberovic, Adrian Derstroff, Andre Franke, Nils Höhner, Patrick Krechel, Lisa Prinz, Astrid Szirmai, Fabian Weigend, Stefan Müller

Proceedings of the Augmented and Virtual Reality - Second International Conference, 2015

2012

B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data.

Benjamin Kreck, George Marnellos, Julia Richter, Felix Krueger, Reiner Siebert, Andre Franke

Bioinform., 2012

2010

SNPexp - A web tool for calculating and visualizing correlation between HapMap genotypes and gene expression levels.

Kristian Holm, Espen Melum, Andre Franke, Tom H. Karlsen

BMC Bioinform., 2010

CNVineta: a data mining tool for large case-control copy number variation datasets.

Michael Wittig, Ingo Helbig, Stefan Schreiber, Andre Franke

Bioinform., 2010

2009

GMFilter and SXTestPlate: software tools for improving the SNPlex^TM genotyping system.

Markus Teuber, Michael H. Wenz, Stefan Schreiber, Andre Franke

BMC Bioinform., 2009