Andreas Hildebrandt

  • Johannes Gutenberg University Mainz, Germany
  • Saarland University, Saarbrücken, Germany (former)

According to our database1, Andreas Hildebrandt authored at least 49 papers between 2001 and 2021.

Collaborative distances:



In proceedings 
PhD thesis 


Online presence:



CARE: context-aware sequencing read error correction.
Bioinform., 2021

Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars.
Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021

A big data approach to metagenomics for all-food-sequencing.
BMC Bioinform., 2020

AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation.
Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020

Dedicated Bioinformatics Analysis Hardware.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

NESSie.jl - Efficient and intuitive finite element and boundary element methods for nonlocal protein electrostatics in the Julia language.
J. Comput. Sci., 2018

MetaCache: context-aware classification of metagenomic reads using minhashing.
Bioinform., 2017

Graph Rewriting Based Search for Molecular Structures: Definitions, Algorithms, Hardness.
Proceedings of the Software Technologies: Applications and Foundations, 2017

CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm.
Int. J. High Perform. Comput. Appl., 2016

rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.
BMC Bioinform., 2016

ballaxy: web services for structural bioinformatics.
Bioinform., 2015

Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking.
J. Chem. Inf. Model., 2014

Efficient computation of root mean square deviations under rigid transformations.
J. Comput. Chem., 2014

SKINK: a web server for string kernel based kink prediction in α-helices.
Bioinform., 2014

Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

Algorithms for the Maximum Weight Connected k -Induced Subgraph Problem.
Proceedings of the Combinatorial Optimization and Applications, 2014

A Greedy Algorithm for Hierarchical Complete Linkage Clustering.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

CellLineNavigator: a workbench for cancer cell line analysis.
Nucleic Acids Res., 2013

NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.
BMC Bioinform., 2013

Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics.
Proceedings of the German Conference on Bioinformatics 2013, 2013

PresentaBALL - A powerful package for presentations and lessons in structural biology.
Proceedings of the IEEE Symposium on Biological Data Visualization, 2013

On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking.
J. Chem. Inf. Model., 2012

Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching.
BMC Bioinform., 2012

A dynamic program analysis to find floating-point accuracy problems.
Proceedings of the ACM SIGPLAN Conference on Programming Language Design and Implementation, 2012

ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences.
Proceedings of the 16th International Conference on Information Visualisation, 2012

String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins.
J. Chem. Inf. Model., 2011

Automated bond order assignment as an optimization problem.
Bioinform., 2011

A fast solver for nonlocal electrostatic theory in biomolecular science and engineering.
Proceedings of the 48th Design Automation Conference, 2011

A new numerical method for nonlocal electrostatics in biomolecular simulations.
J. Comput. Phys., 2010

BALL - biochemical algorithms library 1.3.
BMC Bioinform., 2010

A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling.
Proceedings of the Smart Graphics, 2010

Real-Time Ray Tracing of Complex Molecular Scenes.
Proceedings of the 14th International Conference on Information Visualisation, 2010

Measuring properties of molecular surfaces using ray casting.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Signal Processing in Proteomics.
Proceedings of the Proteome Bioinformatics, 2010

A consensus line search algorithm for molecular potential energy functions.
J. Comput. Chem., 2009

Highly accelerated feature detection in proteomics data sets using modern graphics processing units.
Bioinform., 2009

Automated Bond Order Assignment as an Optimization Problem.
Proceedings of the German Conference on Bioinformatics 2009, 2009

Computational Quantification of Peptides from LC-MS Data.
J. Comput. Biol., 2008

OpenMS - An open-source software framework for mass spectrometry.
BMC Bioinform., 2008

Electrostatic potentials of proteins in water: a structured continuum approach.
Bioinform., 2007

A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.
Proceedings of the Research in Computational Molecular Biology, 2007

BN++ - A Biological Information System.
J. Integr. Bioinform., 2006

A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.
BMC Bioinform., 2006

BALLView: a tool for research and education in molecular modeling.
Bioinform., 2006

High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.
Proceedings of the Biocomputing 2006, 2006

BALLView: An object-oriented molecular visualization and modeling framework.
J. Comput. Aided Mol. Des., 2005

Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools.
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005

High-accuracy peak picking of proteomics data.
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005

A NMR-spectra-based scoring function for protein docking.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001