Andrew R. Jones

According to our database, Andrew R. Jones authored at least 25 papers between 1996 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues.

Shengbo Wang, David García-Seisdedos, Ananth Prakash, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Silvie Fexova, Pablo A. Moreno, Irene Papatheodorou, Andrew R. Jones, Juan Antonio Vizcaíno

PLoS Comput. Biol., 2022

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.

Beatrice Amos, Cristina Aurrecoechea, Matthieu Barba, Ana Barreto, Evelina Y. Basenko, Wojciech Bazant, Robert Belnap, Ann S. Blevins, Ulrike Böhme, John Brestelli, Brian P. Brunk, Mark J. Caddick, Danielle Callan, Lahcen I. Campbell, Mikkel B. Christensen, George K. Christophides, Kathryn Crouch, Kristina Davis, Jeremy D. DeBarry, Ryan Doherty, Yikun Duan, Michael Dunn, Dave Falke, Steve Fisher, Paul Flicek, Brett Fox, Bindu Gajria, Gloria I. Giraldo-Calderón, Omar S. Harb, Elizabeth Harper, Christiane Hertz-Fowler, Mark J. Hickman, Connor Howington, Sufen Hu, Jay C. Humphrey, John Iodice, Andrew R. Jones, John Judkins, Sarah A. Kelly, Jessica C. Kissinger, Dae Kun Kwon, Kristopher Lamoureux, Daniel Lawson, Wei Li, Kallie Lies, Disha Lodha, Jamie Long, Robert M. MacCallum, Gareth Maslen, Mary Ann McDowell, Jaroslaw Nabrzyski, David S. Roos, Samuel S. C. Rund, Stephanie wever Schulman, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Christian J. Stoeckert Jr., Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A. Wilkinson, Lin Xu, Jie Zheng

Nucleic Acids Res., 2022

2021

MHCVision: estimation of global and local false discovery rate for MHC class I peptide binding prediction.

Phorutai Pearngam, Sira Sriswasdi, Trairak Pisitkun, Andrew R. Jones

Bioinform., 2021

An OMICs-based meta-analysis to support infection state stratification.

Ashleigh C. Myall, Simon Perkins, David Rushton, Jonathan David, Phillippa Spencer, Andrew R. Jones, Philipp Antczak

Bioinform., 2021

2020

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools.

Faviel F. Gonzalez-Galarza, Antony McCabe, Eduardo José Melo dos Santos, James Jones, Louise Y. C. Takeshita, Nestor D. Ortega-Rivera, Glenda M. Del Cid-Pavon, Kerry Ramsbottom, Gurpreet S. Ghattaoraya, Ana Alfirevic, Derek Middleton, Andrew R. Jones

Nucleic Acids Res., 2020

2016

A web resource for mining HLA associations with adverse drug reactions: HLA-ADR.

Gurpreet S. Ghattaoraya, Yenal Dundar, Faviel F. Gonzalez-Galarza, Maria Helena Thomaz Maia, Eduardo José Melo dos Santos, Andrea Luciana Soares da Silva, Antony McCabe, Derek Middleton, Ana Alfirevic, Rumona Dickson, Andrew R. Jones

Database J. Biol. Databases Curation, 2016

Chapter 11. Data Formats of the Proteomics Standards Initiative.

Juan Antonio Vizcaíno, Simon Perkins, Andrew R. Jones, Eric W. Deutsch

Proceedings of the Proteome Informatics, 2016

Chapter 5. Protein Inference and Grouping.

Andrew R. Jones

Proceedings of the Proteome Informatics, 2016

Chapter 15. Proteogenomics: Proteomics for Genome Annotation.

Fawaz Ghali, Andrew R. Jones

Proceedings of the Proteome Informatics, 2016

2015

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.

Faviel F. Gonzalez-Galarza, Louise Y. C. Takeshita, Eduardo José Melo dos Santos, Felicity Kempson, Maria Helena Thomaz Maia, Andrea Luciana Soares da Silva, André Luiz Teles e Silva, Gurpreet S. Ghattaoraya, Ana Alfirevic, Andrew R. Jones, Derek Middleton

Nucleic Acids Res., 2015

Development of data representation standards by the human proteome organization proteomics standards initiative.

Eric W. Deutsch, Juan P. Albar, Pierre-Alain Binz, Martin Eisenacher, Andrew R. Jones, Gerhard Mayer, Gilbert S. Omenn, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob

J. Am. Medical Informatics Assoc., 2015

2014

An integrated approach to understand apicomplexan metabolism from their genomes.

Achchuthan Shanmugasundram, Faviel F. Gonzalez-Galarza, Jonathan M. Wastling, Olga Vasieva, Andrew R. Jones

BMC Bioinform., 2014

2013

Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites.

Achchuthan Shanmugasundram, Faviel F. Gonzalez-Galarza, Jonathan M. Wastling, Olga Vasieva, Andrew R. Jones

Nucleic Acids Res., 2013

A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations.

Louise Y. C. Takeshita, Faviel F. Gonzalez-Galarza, Eduardo José Melo dos Santos, Maria Helena Thomaz Maia, Mushome M. Rahman, Syed M. S. Zain, Derek Middleton, Andrew R. Jones

Database J. Biol. Databases Curation, 2013

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

Gerhard Mayer, Luisa Montecchi-Palazzi, David Ovelleiro, Andrew R. Jones, Pierre-Alain Binz, Eric W. Deutsch, Matthew Chambers, Marius Kallhardt, Fredrik Levander, James Shofstahl, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob, Christian Stephan, Helmut E. Meyer, Martin Eisenacher

Database J. Biol. Databases Curation, 2013

2011

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations.

Faviel F. Gonzalez-Galarza, Stephen Christmas, Derek Middleton, Andrew R. Jones

Nucleic Acids Res., 2011

2010

Managing Experimental Data Using FuGE.

Andrew R. Jones, Allyson L. Lister

Proceedings of the Proteome Bioinformatics, 2010

An Introduction to Proteome Bioinformatics.

Andrew R. Jones, Simon J. Hubbard

Proceedings of the Proteome Bioinformatics, 2010

2009

FuGEFlow: data model and markup language for flow cytometry.

Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman

BMC Bioinform., 2009

2008

A toolkit for capturing and sharing FuGE experiments.

Khalid Belhajjame, Andrew R. Jones, Norman W. Paton

Bioinform., 2008

2007

Pride Wizard: generation of standards compliant quantitative proteomics data.

Neil Swainston, Jennifer A. Siepen, Andrew R. Jones, Sarah R. Hart, Henning Hermjakob, Philip Jones, Simon J. Hubbard

BMC Syst. Biol., 2007

2006

Data Access and Integration in the ISPIDER Proteomics Grid.

Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer A. Siepen, Andrew R. Jones, Nigel J. Martin, Alexandra Poulovassilis, Simon J. Hubbard, Suzanne M. Embury, Norman W. Paton

Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005

An analysis of extensible modelling for functional genomics data.

Andrew R. Jones, Norman W. Paton

BMC Bioinform., 2005

2004

An object model and database for functional genomics.

Andrew R. Jones, Ela Hunt, Jonathan M. Wastling, Angel D. Pizarro, Christian J. Stoeckert Jr.

Bioinform., 2004

1996

A Combinatorial Approach to the Double Cosets of the Symmetric Group with respect to Young Subgroups.

Andrew R. Jones

Eur. J. Comb., 1996