Ernst Houtgast

According to our database1, Ernst Houtgast authored at least 14 papers between 2005 and 2019.

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Bibliography

2019
On Hardware-Accelerated Maximally-Efficient Systolic Arrays: Acceleration and Optimization of Genomics Pipelines Through Hardware/Software Co-Design.
PhD thesis, 2019

2018
Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths.
Computational Biology and Chemistry, 2018

Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM.
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

2017
High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL.
Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

2016
An Efficient GPUAccelerated Implementation of Genomic Short Read Mapping with BWAMEM.
SIGARCH Computer Architecture News, 2016

Power-efficiency analysis of accelerated BWA-MEM implementations on heterogeneous computing platforms.
Proceedings of the International Conference on ReConFigurable Computing and FPGAs, 2016

Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms.
Proceedings of the 24th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2016

GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing.
Proceedings of the Architecture of Computing Systems - ARCS 2016, 2016

2015
An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm.
Proceedings of the 2015 International Conference on Embedded Computer Systems: Architectures, 2015

Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm.
Proceedings of the IEEE/ACM International Conference on Computer-Aided Design, 2015

2011
HMMER Performance Model for Multicore Architectures.
Proceedings of the 14th Euromicro Conference on Digital System Design, 2011

Scaling HMMER Performance on Multicore Architectures.
Proceedings of the International Conference on Complex, 2011

2009
Interaction Volume Management in a Multi-scale Virtual Environment.
Proceedings of the Advances in Information and Intelligent Systems, 2009

2005
Navigation and Interaction in a Multi-Scale Stereoscopic Environment.
Proceedings of the IEEE Virtual Reality Conference 2005, 2005


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