Fons J. Verbeek

Orcid: 0000-0003-2445-8158

Affiliations:
  • Leiden Institute of Advanced Computer Science, Netherlands


According to our database1, Fons J. Verbeek authored at least 105 papers between 1992 and 2024.

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Bibliography

2024
MS2OD: outlier detection using minimum spanning tree and medoid selection.
Mach. Learn. Sci. Technol., March, 2024

Visualizing, Analyzing and Constructing L-System from Arborized 3D Model Using a Web Application.
Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024

2023
Image Synthesis and Modified BlendMask Instance Segmentation for Automated Nanoparticle Phenotyping.
IEEE Trans. Medical Imaging, December, 2023

Text line extraction strategy for palm leaf manuscripts.
Pattern Recognit. Lett., October, 2023

Improving weakly supervised phrase grounding via visual representation contextualization with contrastive learning.
Appl. Intell., June, 2023

Fine-grained label learning in object detection with weak supervision of captions.
Multim. Tools Appl., February, 2023

Analysis of automatic image classification methods for Urticaceae pollen classification.
Neurocomputing, 2023

Advances in Kidney Biopsy Structural Assessment through Dense Instance Segmentation.
CoRR, 2023

Detection of anomalously emitting ships through deviations from predicted TROPOMI NO2 retrievals.
CoRR, 2023

FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Foreground Extraction in Histo-Pathological Image by Combining Mathematical Morphology Operations and U-Net.
Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, 2023

Participation Patterns of Interactive Playful Museum Exhibits: Evaluating the Participant Journey Map through Situated Observations.
Proceedings of the 2023 ACM Designing Interactive Systems Conference, 2023

2022
Caps Captioning: A Modern Image Captioning Approach Based on Improved Capsule Network.
Sensors, 2022

Supervised Segmentation of NO2 Plumes from Individual Ships Using TROPOMI Satellite Data.
Remote. Sens., 2022

Real-time interactive visualization of large networks on a tiled display system.
Displays, 2022

A Feature Weighted Tracking Method for 3D Neutrophils in Time-lapse Microscopy.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
The Participant Journey Map: Understanding the Design of Interactive Augmented Play Spaces.
Frontiers Comput. Sci., 2021

Large-scale zero-shot learning in the wild: Classifying zoological illustrations.
Ecol. Informatics, 2021

Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations.
BMC Bioinform., 2021

A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions.
Bioinform., 2021

Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer.
IEEE Access, 2021

Detection of Mulberry Ripeness Stages Using Deep Learning Models.
IEEE Access, 2021

Binarization Strategy Using Multiple Convolutional Autoencoder Network for Old Sundanese Manuscript Images.
Proceedings of the Document Analysis and Recognition, 2021

Improving evaluation of NO2 emission from ships using spatial association on TROPOMI satellite data.
Proceedings of the SIGSPATIAL '21: 29th International Conference on Advances in Geographic Information Systems, 2021

2020
Segmentation-Driven Optimization For Iterative Reconstruction in Optical Projection Tomography: An Exploration.
IEEE Trans. Computational Imaging, 2020

Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB).
J. Integr. Bioinform., 2020

L-systems from 3D-imaging of Phenotypes of Arborized Structures.
Fundam. Informaticae, 2020

Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes.
BMC Bioinform., 2020

The Importance of the Peak-End Rule for Repeated Visits to Augmented Play Spaces.
Proceedings of the 15th International Conference on Persuasive Technology, Adjunct Proceedings (PERSUASIVE 2020), Aalborg, Denmark, April 20th, 2020

A Cross-Stitch Architecture for Joint Registration and Segmentation in Adaptive Radiotherapy.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2020

Probabilistic Inference for Camera Calibration in Light Microscopy Under Circular Motion.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019
Semantic annotation of natural history collections.
J. Web Semant., 2019

Automated Semantic Annotation of Species Names in Handwritten Texts.
Proceedings of the Advances in Information Retrieval, 2019

3D Image Deblur using Point Spread Function Modelling for Optical Projection Tomography.
Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

2018
An efficient and robust hybrid method for segmentation of zebrafish objects from bright-field microscope images.
Mach. Vis. Appl., 2018

From Handwritten Manuscripts to Linked Data.
Proceedings of the Digital Libraries for Open Knowledge, 2018

Fast and Accurate Person Re-identification with Xception Conv-Net and C2F.
Proceedings of the Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, 2018

2017
A Two-Phase 3-D Reconstruction Approach for Light Microscopy Axial-View Imaging.
IEEE J. Sel. Top. Signal Process., 2017

On the Efficiency of a VR Hand Gesture-Based Interface for 3D Object Manipulations in Conceptual Design.
Int. J. Hum. Comput. Interact., 2017

Multi-modal 3d reconstruction and measurements of zebrafish larvae and its organs using axial-view microscopy.
Proceedings of the 2017 IEEE International Conference on Image Processing, 2017

Conceptual Process Models and Quantitative Analysis of Classification Problems in Scrum Software Development Practices.
Proceedings of the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, 2017

2016
Modeling biological gradient formation: combining partial differential equations and Petri nets.
Nat. Comput., 2016

Rough Fuzzy C-means and Particle Swarm Optimization Hybridized Method for Information Clustering Problem.
J. Commun., 2016

Hierarchical classification strategy for Phenotype extraction from epidermal growth factor receptor endocytosis screening.
BMC Bioinform., 2016

Segmentation of Zebrafish Larva Inhomogeneous 3D Images Using the Level-Set Method.
Proceedings of the Visualization and Data Analysis 2016, 2016

A Semantic-Based Metadata Validation for an Automated High-Throughput Screening Workflow: Case Study in CytomicsDB.
Proceedings of the Bioinformatics and Biomedical Engineering, 2016

The Morality Machine: Tracking Moral Values in Tweets.
Proceedings of the Advances in Intelligent Data Analysis XV - 15th International Symposium, 2016

Making Sense of Illustrated Handwritten Archives.
Proceedings of the 11th Annual International Conference of the Alliance of Digital Humanities Organizations, 2016

The Impact of Co-Located Play on Social Presence and Game Experience in a VR Game.
Proceedings of the First Joint International Conference of Digital Games Research Association and Foundation of Digital Games, 2016

Fluorescence and bright-field 3D image fusion based on sinogram unification for optical projection tomography.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Machine Learning approach to discriminate Saccharomyces cerevisiae yeast cells using sophisticated image features.
J. Integr. Bioinform., 2015

Coupling of Petri Net Models of the Mycobacterial Infection Process and Innate Immune Response.
Comput., 2015

Contour expansion algorithm preprocessed by hough transform and circular shortest path for ovoid objects.
Proceedings of the 2015 International Conference on Image Processing Theory, 2015

Silhouette-based 3D model for zebrafish high-throughput imaging.
Proceedings of the 2015 International Conference on Image Processing Theory, 2015

Dam-based rolling ball with fuzzy-rough constraints, a new background subtraction algorithm for image analysis in microscopy.
Proceedings of the 2015 International Conference on Image Processing Theory, 2015

2014
CytomicsDB: A Metadata-Based Storage and Retrieval Approach for High-Throughput Screening Experiments.
Proceedings of the Pattern Recognition in Bioinformatics, 2014

Extracting contours of oval-shaped objects by Hough transform and minimal path algorithms.
Proceedings of the Sixth International Conference on Digital Image Processing, 2014

A multi-scale extensive Petri net model of the bacterial-macrophage interaction.
Proceedings of the 5th International Workshop on Biological Processes & Petri Nets co-located with 35th International Conference on Application and Theory of Petri Nets and Concurreny (PETRI NETS 2014), 2014

2013
Analytical evaluation of algorithms for point cloud surface reconstruction using shape features.
J. Electronic Imaging, 2013

Nature Inspired Phenotype Analysis with 3D Model Representation Optimization.
Proceedings of the Innovations in Bio-inspired Computing and Applications, 2013

Track E: Hybrid biological-digital systems.
Proceedings of the 7th IEEE International Conference on Digital Ecosystems and Technologies, 2013

Tinkering in Scientific Education.
Proceedings of the Advances in Computer Entertainment - 10th International Conference, 2013

2012
Modeling Innate Immune Response to Early <i>Mycobacterium</i> Infection.
Comput. Math. Methods Medicine, 2012

Visualization and analysis of 3D gene expression patterns in zebrafish using web services.
Proceedings of the Visualization and Data Analysis 2012, 2012

Segmentation for High-Throughput Image Analysis: Watershed Masked Clustering.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

Efficient and Robust Shape Retrieval from Deformable Templates.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

Bioscientific Data Processing and Modeling.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

Automation in Cytomics: A Modern RDBMS Based Platform for Image Analysis and Management in High-Throughput Screening Experiments.
Proceedings of the Health Information Science - First International Conference, 2012

Caveolae image analysis for pathogen diabetes.
Proceedings of the 5th International Conference on BioMedical Engineering and Informatics, 2012

Numerical Analysis of Image based High Throughput Zebrafish Infection Screens - Matching Meaning with Data.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

Evaluation of algorithms for point cloud surface reconstruction through the analysis of shape parameters.
Proceedings of the Three-Dimensional Image Processing (3DIP) and Applications II, 2012

2011
Digital Atlasing and Standardization in the Mouse Brain.
PLoS Comput. Biol., 2011

Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data.
J. Integr. Bioinform., 2011

A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology.
J. Integr. Bioinform., 2011

Understanding the Artificial.
Int. J. Soc. Robotics, 2011

Modular Approach for a New Ontology.
Proceedings of the Modular Ontologies - Proceedings of the Fifth International Workshop, 2011

Pattern Recognition in High-Content Cytomics Screens for Target Discovery - Case Studies in Endocytosis.
Proceedings of the Pattern Recognition in Bioinformatics, 2011

Spatio-temporal Modeling and Simulation of Mycobacterium Pathogenesis Using Petri Nets.
Proceedings of the Bio-Inspired Models of Networks, Information, and Computing Systems, 2011

2010
Comparison and Integration of Target Prediction Algorithms for microRNA Studies.
J. Integr. Bioinform., 2010

Mining and Analysing Spatio-Temporal Patterns of Gene Expression in an Integrative Database Framework.
J. Integr. Bioinform., 2010

Different geometries in ontology visualization.
Proceedings of the Visualization and Data Analysis, 2010

Creating a new Ontology: a Modular Approach.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

Pattern Recognition for High Throughput Zebrafish Imaging Using Genetic Algorithm Optimization.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

Frequent Episode Mining to Support Pattern Analysis in Developmental Biology.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

Onto-Frogger: the making of.
Proceedings of the 6th Nordic Conference on Human-Computer Interaction 2010, 2010

Video games for collection exploration: games for and out of data repositories.
Proceedings of the 14th International Academic MindTrek Conference: Envisioning Future Media Environments, 2010

Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm.
Proceedings of the BIOINFORMATICS 2010, 2010

Modelling Gradients using Petri Nets.
Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010

2009
Cell Tracking and Data Analysis of in Vitro Tumour Cells from Time-lapse Image Sequences.
Proceedings of the VISAPP 2009 - Proceedings of the Fourth International Conference on Computer Vision Theory and Applications, Lisboa, Portugal, February 5-8, 2009, 2009

Observations on Semantic Annotation of Microscope Images for Life Sciences.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Onto-Frogger: Playing with Semantic Structure.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Integration of information from different ontologies.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Node-Link and Containment Methods in Ontology Visualization.
Proceedings of the 5th International Workshop on OWL: Experiences and Directions (OWLED 2009), 2009

The TicTag application: towards tag-based meta-search for browsing the web.
Proceedings of the 2009 British Computer Society Conference on Human-Computer Interaction, 2009

2008
Data Integration for Spatio-Temporal Patterns of Gene Expression of Zebrafish development: the GEMS database.
J. Integr. Bioinform., 2008

Integrating computer games in speech therapy for children who stutter.
Proceedings of the 1st Workshop on Child, Computer and Interaction, 2008

miRNA target prediction through mining of miRNA relationships.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007
Developmental Anatomy Ontology of Zebrafish: an Integrative semantic framework.
J. Integr. Bioinform., 2007

Affect, Anticipation, and Adaptation: Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents.
Adapt. Behav., 2007

Ontological Context Visualization.
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

On Affect and Self-adaptation: Potential Benefits of Valence-Controlled Action-Selection.
Proceedings of the Bio-inspired Modeling of Cognitive Tasks, 2007

2006
Construction of Correlation Networks with Explicit Time-Slices Using Time-Lagged, Variable Interval Standard and Partial Correlation Coefficients.
Proceedings of the Computational Life Sciences II, 2006

2000
A Virtual Lab-Notebook for Multidimensional Microscopic Images.
Proceedings of the International Conference on Information Visualisation, 2000

1992
Deformation correction using Euclidean contour distance maps.
Proceedings of the 11th IAPR International Conference on Pattern Recognition, 1992


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