HyeongSik Kim

According to our database, HyeongSik Kim authored at least 28 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.

J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, Hyeongsik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall

Bioinform., March, 2024

2023

MapperGPT: Large Language Models for Linking and Mapping Entities.

Nicolas Matentzoglu, J. Harry Caufield, Harshad B. Hegde, Justin T. Reese, Sierra A. T. Moxon, Hyeongsik Kim, Nomi L. Harris, Melissa A. Haendel, Christopher J. Mungall

CoRR, 2023

Gene Set Summarization using Large Language Models.

Marcin P. Joachimiak, J. Harry Caufield, Nomi L. Harris, Hyeongsik Kim, Christopher J. Mungall

CoRR, 2023

A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling.

Nicolas Matentzoglu, Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris, Emily Hartley, Harshad B. Hegde, Sven Hertling, Charles Tapley Hoyt, Hyeongsik Kim, Huanyu Li, James A. McLaughlin, Cássia Trojahn, Nicole A. Vasilevsky, Christopher J. Mungall

Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

A Textual Dataset for Situated Proactive Response Selection.

Naoki Otani, Jun Araki, HyeongSik Kim, Eduard H. Hovy

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

2022

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies.

Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland

CoRR, 2022

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.

Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland

Database J. Biol. Databases Curation, 2022

A Simple Standard for Sharing Ontological Mappings (SSSOM).

Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall

Database J. Biol. Databases Curation, 2022

EaT-PIM: Substituting Entities in Procedural Instructions Using Flow Graphs and Embeddings.

Sola S. Shirai, HyeongSik Kim

Proceedings of the Semantic Web - ISWC 2022, 2022

A simple standard for ontological mappings 2022: updates of data model and outlook.

Nicolas Matentzoglu, Joe E. Flack, John Graybeal, Nomi L. Harris, Harshad B. Hegde, Charles Tapley Hoyt, Hyeongsik Kim, Sabrina Toro, Nicole A. Vasilevsky, Christopher J. Mungall

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

2021

Neuro-Symbolic Deductive Reasoning for Cross-Knowledge Graph Entailment.

Monireh Ebrahimi, Md. Kamruzzaman Sarker, Federico Bianchi, Ning Xie, Aaron Eberhart, Derek Doran, HyeongSik Kim, Pascal Hitzler

Proceedings of the AAAI 2021 Spring Symposium on Combining Machine Learning and Knowledge Engineering (AAAI-MAKE 2021), 2021

2019

Semantic query transformations for increased parallelization in distributed knowledge graph query processing.

HyeongSik Kim, Abhisha Bhattacharyya, Kemafor Anyanwu

Proceedings of the International Conference for High Performance Computing, 2019

2018

Scalable Exploratory Search on Knowledge Graphs Using Apache Spark.

Avimanyu Mukhopadhyay, HyeongSik Kim, Kemafor Anyanwu

Proceedings of the 27th IEEE International Conference on Enabling Technologies: Infrastructure for Collaborative Enterprises, 2018

2017

Type-based Semantic Optimization for Scalable RDF Graph Pattern Matching.

HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu

Proceedings of the 26th International Conference on World Wide Web, 2017

A semantics-aware storage framework for scalable processing of knowledge graphs on Hadoop.

HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

2016

Scalable Ontological Query Processing over Semantically Integrated Life Science Datasets using MapReduce.

HyeongSik Kim, Kemafor Anyanwu

CoRR, 2016

Optimization of Complex SPARQL Analytical Queries.

Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu

Proceedings of the 19th International Conference on Extending Database Technology, 2016

2015

Rewriting complex SPARQL analytical queries for efficient cloud-based processing.

Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu

Proceedings of the 2015 IEEE International Conference on Big Data (IEEE BigData 2015), Santa Clara, CA, USA, October 29, 2015

2014

A Semantics-Oriented Storage Model for Big Heterogeneous RDF Data.

HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu

Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

Algebraic Optimization of RDF Graph Pattern Queries on MapReduce.

Kemafor Anyanwu, Padmashree Ravindra, HyeongSik Kim

Proceedings of the Large Scale and Big Data - Processing and Management., 2014

2013

Algebraic Optimization for Processing Graph Pattern Queries in the Cloud.

Kemafor Anyanwu, HyeongSik Kim, Padmashree Ravindra

IEEE Internet Comput., 2013

Optimizing RDF(S) queries on cloud platforms.

HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu

Proceedings of the 22nd International World Wide Web Conference, 2013

Optimizing queries over semantically integrated datasets on MapReduce platforms.

HyeongSik Kim, Kemafor Anyanwu

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

Scaling concurrency of personalized Semantic search over Large RDF data.

Haizhou Fu, HyeongSik Kim, Kemafor Anyanwu

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

2012

To nest or not to nest, when and how much: representing intermediate results of graph pattern queries in MapReduce based processing.

Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu

Proceedings of the 4th International Workshop on Semantic Web Information Management, 2012

Scan-Sharing for Optimizing RDF Graph Pattern Matching on MapReduce.

HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu

Proceedings of the 2012 IEEE Fifth International Conference on Cloud Computing, 2012

2011

From SPARQL to MapReduce: The Journey Using a Nested TripleGroup Algebra.

HyeongSik Kim, Padmashree Ravindra, Kemafor Anyanwu

Proc. VLDB Endow., 2011

An Intermediate Algebra for Optimizing RDF Graph Pattern Matching on MapReduce.

Padmashree Ravindra, HyeongSik Kim, Kemafor Anyanwu

Proceedings of the Semanic Web: Research and Applications, 2011