Ramona L. Walls

According to our database, Ramona L. Walls authored at least 25 papers between 2012 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies.

Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland

CoRR, 2022

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.

Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland

Database J. Biol. Databases Curation, 2022

Leveraging Biolink for Interoperability between Semantic Models.

Ian R. Braun, Pablo Alarcón Moreno, Emily Hartley, Daniel Olson, Nirupama Benis, Ronald Cornet, Mark D. Wilkinson, Ramona L. Walls

Proceedings of the AMIA 2022, 2022

2021

Ten simple rules to cultivate transdisciplinary collaboration in data science.

Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Lee Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn, Tonantzin Tarin, David S. LeBauer, David Ribes, Dunbar P. Birnie III, Carol Lushbough, Eric Carr, Grey Nearing, Jeremy Fischer, Kevin Tyle, Luis Carrasco, Meagan Lang, Peter W. Rose, Richard R. Rushforth, Samapriya Roy, Thomas Matheson, Tina Lee, C. Titus Brown, Tracy K. Teal, Monica Papes, Stephen G. Kobourov, Nirav C. Merchant

PLoS Comput. Biol., 2021

Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences.

Joan E. Damerow, Charuleka Varadharajan, Kristin Boye, Eoin L. Brodie, Madison Burrus, K. Dana Chadwick, Robert Crystal-Ornelas, Hesham Elbashandy, Ricardo J. Eloy Alves, Kim S. Ely, Amy E. Goldman, Ted Habermann, Valerie C. Hendrix, Zarine Kakalia, Kenneth M. Kemner, Annie B. Kersting, Nancy Merino, Fianna O'Brien, Zach Perzan, Emily Robles, Patrick Sorensen, James C. Stegen, Ramona L. Walls, Pamela Weisenhorn, Mavrik Zavarin, Deborah A. Agarwal

Data Sci. J., 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters

Database J. Biol. Databases Curation, 2021

Internet of Samples.

Stephen M. Richard, David Vieglais, Hong Cui, Neil Davies, John Deck, Quan Gan, Eric C. Kansa, Sarah Whitcher Kansa, John A. Kunze, Danny Mandel, Christopher Meyer, Thomas Orrell, Sarah Ramdeen, Rebecca Snyder, Ramona L. Walls, Yuxuan Zhou, Kerstin A. Lehnert

Proceedings of the Information: Equity, Diversity, Inclusion, Justice, and Relevance, 2021

A Responsive Data Curation and Integration Pipeline for Rare Disease Data.

Ramona L. Walls, Jeffery S. Barrett, Alexandre Betourne, Emily Hartley, Jane Larkindale, Daniel Olson, William T. Roddy, Amanda Borens

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Transforming the study of organisms: Phenomic data models and knowledge bases.

Anne E. Thessen, Ramona L. Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P. Balhoff, Christopher J. Mungall, Deborah L. McGuinness, Brian J. Stucky, Matthew J. Yoder, Melissa A. Haendel

PLoS Comput. Biol., 2020

2019

Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure.

Maria Esteva, Ramona L. Walls, Andrew B. Magill, Weijia Xu, Ruizhu Huang, James D. Carson, Jawon Song

Data Inf. Manag., 2019

2018

Integrating and Managing Biodiversity Data with the Biocollections Ontology.

Ramona L. Walls, Pier Luigi Buttigieg, John Deck, Robert P. Guralnick, John Wieczorek

Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life.

Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp, James A. Macklin, Chelsea D. Specht, Todd J. Vision, Ramona L. Walls, Carolyn J. Lawrence-Dill

Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software.

Carrine E. Blank, Hong Cui, Jin Mao, Lisa R. Moore, Robert W. Thacker, Ramona L. Walls

Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main

Database J. Biol. Databases Curation, 2018

2016

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.

Pier Luigi Buttigieg, Evangelos Pafilis, Suzanna E. Lewis, Mark P. Schildhauer, Ramona L. Walls, Christopher J. Mungall

J. Biomed. Semant., 2016

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.

Carrine E. Blank, Hong Cui, Lisa R. Moore, Ramona L. Walls

J. Biomed. Semant., 2016

Defining and Sustaining Populations and Communities.

Ramona L. Walls

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Environmental Semantics for Sustainable Development in an Interconnected Biosphere.

Pier Luigi Buttigieg, Mark Jensen, Ramona L. Walls, Christopher J. Mungall

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Identifier Services: Tracking Objects and Metadata Across Time and Distributed Storage Systems.

Maria Esteva, Ramona L. Walls

Proceedings of the 2016 International Conference on Dublin Core and Metadata Applications, 2016

Content-based comparison for collections identification.

Weijia Xu, Ruizhu Huang, Maria Esteva, Jawon Song, Ramona L. Walls

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

2015

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.

Philippe Rocca-Serra, Ramona L. Walls, Jacob Parnell, Rachel Gallery, Jie Zheng, Susanna-Assunta Sansone, Alejandra N. González-Beltrán

Database J. Biol. Databases Curation, 2015

2014

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.

Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel

J. Biomed. Semant., 2014

Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach.

Philippe Rocca-Serra, Ramona L. Walls, Jacob Parnell, Rachel Gallery, Jie Zheng, Susanna-Assunta Sansone, Alejandra N. González-Beltrán

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2012

A plant disease extension of the Infectious Disease Ontology.

Ramona L. Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources.

Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012