Nomi L. Harris

Orcid: 0000-0001-6315-3707

According to our database1, Nomi L. Harris authored at least 31 papers between 1992 and 2024.

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Bibliography

2024
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
Bioinform., March, 2024

2023
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).
CoRR, 2023

MapperGPT: Large Language Models for Linking and Mapping Entities.
CoRR, 2023

Gene Set Summarization using Large Language Models.
CoRR, 2023

KG-Hub - Building and Exchanging Biological Knowledge Graphs.
CoRR, 2023

A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling.
Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

2022
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies.
CoRR, 2022

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science.
CoRR, 2022

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Database J. Biol. Databases Curation, 2022

A Simple Standard for Sharing Ontological Mappings (SSSOM).
Database J. Biol. Databases Curation, 2022

A simple standard for ontological mappings 2022: updates of data model and outlook.
Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

2021
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.
Patterns, 2021

The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

The Human Phenotype Ontology in 2021.
Nucleic Acids Res., 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Database J. Biol. Databases Curation, 2021

The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics.
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res., 2020

Mondo Disease Ontology: Harmonizing Disease Concepts Across the World (short paper).
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2019
Apollo: Democratizing genome annotation.
PLoS Comput. Biol., 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.
Nucleic Acids Res., 2019

ROBOT: A Tool for Automating Ontology Workflows.
BMC Bioinform., 2019

2018
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018).
F1000Research, 2018

2017
The 2017 Bioinformatics Open Source Conference (BOSC).
F1000Research, 2017

2016
The 2015 Bioinformatics Open Source Conference (BOSC 2015).
PLoS Comput. Biol., 2016

The 2016 Bioinformatics Open Source Conference (BOSC).
F1000Research, 2016

2015
The Bioinformatics Open Source Conference (BOSC) 2013.
Bioinform., 2015

2014
Community-driven development for computational biology at Sprints, Hackathons and Codefests.
BMC Bioinform., 2014

2009
Apollo: a community resource for genome annotation editing.
Bioinform., 2009

1993
Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification.
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

1992
Efficient Classification of Massive, Unsegmented Datastreams.
Proceedings of the Ninth International Workshop on Machine Learning (ML 1992), 1992

Mega-Classification: Discovering Motifs in Massive Datastreams.
Proceedings of the 10th National Conference on Artificial Intelligence, 1992


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