James Malone

According to our database1, James Malone authored at least 48 papers between 2006 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2019
Measuring expert performance at manually classifying domain entities under upper ontology classes.
J. Web Semant., 2019

2018
MIRO: guidelines for minimum information for the reporting of an ontology.
J. Biomedical Semantics, 2018

2017
Open Targets: a platform for therapeutic target identification and validation.
Nucleic Acids Research, 2017

Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.
J. Biomedical Semantics, 2017

2016
Ten Simple Rules for Selecting a Bio-ontology.
PLoS Computational Biology, 2016

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.
J. Biomedical Semantics, 2016

The cellular microscopy phenotype ontology.
J. Biomedical Semantics, 2016

Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates.
J. Biomedical Semantics, 2016

Ontologies Guidelines and Evaluation of Ontologies Mapping Tools and Algorithms.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Ontologies Guidelines for Best Practice and a Process to Evaluate Existing Ontologies Mapping Tools and Algorithms.
Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

Introducing the disease and phenotype OAEI track.
Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

Ten Simple Rules for Biomedical Ontology Development.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.
Nucleic Acids Research, 2015

2015 SWAT4LS International Conference Editorial.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Collaborative Ontology Development Using the Webulous Architecture and Google App.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
Nucleic Acids Research, 2014

CLO: The cell line ontology.
J. Biomedical Semantics, 2014

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.
J. Biomedical Semantics, 2014

The EBI RDF platform: linked open data for the life sciences.
Bioinformatics, 2014

Capturing Provenance for a Linkset of Convenience.
Proceedings of the 4th Workshop on Linked Science 2014, 2014

2013
ArrayExpress update - trends in database growth and links to data analysis tools.
Nucleic Acids Research, 2013

Measuring the level of activity in community built bio-ontologies.
Journal of Biomedical Informatics, 2013

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.
Bioinformatics, 2013

Putting OWL into Production at the European Bioinformatics Institute.
Proceedings of the 10th International Workshop on OWL: Experiences and Directions (OWLED 2013) co-located with 10th Extended Semantic Web Conference (ESWC 2013), 2013

2012
Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments.
Nucleic Acids Research, 2012

Translating standards into practice - One Semantic Web API for Gene Expression.
Journal of Biomedical Informatics, 2012

Semantic Web Atlas: Putting Gene Expression Data into Biological Context.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Taking a view on bio-ontologies.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

The SWO Project: A Case Study for Applying Agile Ontology Engineering Methods for Community Driven Ontologies.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011
ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Nucleic Acids Research, 2011

Anatomy ontologies and potential users: bridging the gap.
J. Biomedical Semantics, 2011

Automating generation of textual class definitions from OWL to English.
J. Biomedical Semantics, 2011

MIREOT: The minimum information to reference an external ontology term.
Applied Ontology, 2011

The Vertebrate Bridging Ontology (VBO).
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Rapid Development of an Ontology of Coriell Cell Lines.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
Gene Expression Atlas at the European Bioinformatics Institute.
Nucleic Acids Research, 2010

Modeling biomedical experimental processes with OBI.
J. Biomedical Semantics, 2010

Modeling sample variables with an Experimental Factor Ontology.
Bioinformatics, 2010

2009
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression.
Nucleic Acids Research, 2009

MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB.
Bioinformatics, 2009

Developing an Ontology from the Application Up.
Proceedings of the 5th International Workshop on OWL: Experiences and Directions (OWLED 2009), 2009

2008
Soft Computing in Bioinformatics: Genomic and Proteomic Applications.
Proceedings of the Soft Computing Applications in Industry, 2008

The OWL of Biomedical Investigations.
Proceedings of the Fifth OWLED Workshop on OWL: Experiences and Directions, 2008

2006
Data mining using rule extraction from Kohonen self-organising maps.
Neural Computing and Applications, 2006

Automated trend analysis of proteomics data using an intelligent data mining architecture.
Expert Syst. Appl., 2006

Dynamic Access Control Prediction for Ordered Service Sequence in Grid Environment.
Proceedings of the 2006 IEEE / WIC / ACM International Conference on Web Intelligence (WI 2006), 2006

Semantic Grid Services for Video Analysis.
Proceedings of the 2006 IEEE/WIC/ACM International Conference on Intelligent Agent Technology, 2006


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