Ivo L. Hofacker
Orcid: 0000-0001-7132-0800Affiliations:
- University of Vienna, Institute for Theoretical Chemistry, Austria
According to our database1,
Ivo L. Hofacker
authored at least 90 papers
between 1996 and 2025.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
On csauthors.net:
Bibliography
2025
Proceedings of the Research in Computational Molecular Biology, 2025
2024
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction.
J. Comput. Biol., 2024
2023
Algorithms Mol. Biol., December, 2023
<tt>DrTransformer</tt>: heuristic cotranscriptional RNA folding using the nearest neighbor energy model.
Bioinform., January, 2023
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023
2022
Frontiers Bioinform., 2022
2021
Bioinform., 2021
2020
Proceedings of the Biomedical Engineering Systems and Technologies, 2020
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020), 2020
2019
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction.
J. Bioinform. Comput. Biol., 2019
3D based on 2D: Calculating helix angles and stacking patterns using <i>forgi 2.0</i>, an RNA Python library centered on secondary structure elements.
F1000Research, 2019
Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019
Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction.
Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019
2018
Bioinform., 2018
2017
Bioinform., 2017
2016
Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements.
Nucleic Acids Res., 2016
2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.
PLoS Comput. Biol., 2015
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams.
Bioinform., 2015
2014
Basin Hopping Graph: a computational framework to characterize RNA folding landscapes.
Bioinform., 2014
2013
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
Nucleic Acids Res., 2013
Nucleic Acids Res., 2013
Proceedings of the Advances in Bioinformatics and Computational Biology, 2013
Proceedings of the Advances in Bioinformatics and Computational Biology, 2013
2012
Proceedings of the Advances in Bioinformatics and Computational Biology, 2012
2011
PLoS Comput. Biol., 2011
Nucleic Acids Res., 2011
Nucleic Acids Res., 2011
2010
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures.
Proceedings of the German Conference on Bioinformatics 2010, 2010
2009
Proceedings of the German Conference on Bioinformatics 2009, 2009
2008
Comput. Methods Programs Biomed., 2008
BMC Bioinform., 2008
BMC Bioinform., 2008
Bioinform., 2008
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.
Proceedings of the Bioinformatics Research and Development, 2008
Proceedings of the Visualization in Medicine and Life Sciences., 2008
2007
Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering.
PLoS Comput. Biol., 2007
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
Nucleic Acids Res., 2007
Proceedings of the Foundations of Genetic Algorithms, 9th International Workshop, 2007
2006
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.
Nucleic Acids Res., 2006
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation.
BMC Bioinform., 2006
Algorithms Mol. Biol., 2006
Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006
2005
BMC Bioinform., 2005
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
2004
IEEE ACM Trans. Comput. Biol. Bioinform., 2004
Bioinform., 2004
Proceedings of the Computational Science, 2004
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004
2003
Conserved RNA secondary structures in viral genomes: A survey.
Proceedings of the German Conference on Bioinformatics, 2003
2002
Stochastic pairwise alignments.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
2000
J. Comput. Biol., 2000
1999
Comput. Chem., 1999
Adv. Complex Syst., 1999
An efficient potential for protein sequence design.
Proceedings of the German Conference on Bioinformatics, 1999
Conserved secondary structures in hepatitis B virus DNA.
Proceedings of the German Conference on Bioinformatics, 1999
1998
1996
Proceedings of the Second International Conference on Knowledge Discovery and Data Mining (KDD-96), 1996
Dynamic Programming Algorithm for the Density of States of RNA Secondary Structures.
Proceedings of the German Conference on Bioinformatics, 1996