Manja Marz

According to our database, Manja Marz authored at least 20 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.

Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina A. Sakharova, Manja Marz, Alejandro Reyes, Martin Hölzer, Robert D. Finn

PLoS Comput. Biol., 2023

2021

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov

Nucleic Acids Res., 2021

VIDHOP, viral host prediction with deep learning.

Florian Mock, Adrian Viehweger, Emanuel Barth, Manja Marz

Bioinform., 2021

PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection.

Martin Hölzer, Manja Marz

Bioinform., 2021

EpiDope: a deep neural network for linear B-cell epitope prediction.

Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz

Bioinform., 2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz

Briefings Bioinform., 2021

2020

Tissue-specific Gene Expression Changes Are Associated with Aging in Mice.

Akash Srivastava, Emanuel Barth, Maria A. Ermolaeva, Madlen Guenther, Christiane Frahm, Manja Marz, Otto W. Witte

Genom. Proteom. Bioinform., 2020

2019

Global importance of RNA secondary structures in protein-coding sequences.

Markus Fricke, Ruman Gerst, Bashar Ibrahim, Michael Niepmann, Manja Marz

Bioinform., 2019

2016

Prediction of conserved long-range RNA-RNA interactions in full viral genomes.

Markus Fricke, Manja Marz

Bioinform., 2016

2014

Challenges in RNA virus bioinformatics.

Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer

Bioinform., 2014

Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures.

Jing Qin, Markus Fricke, Manja Marz, Peter F. Stadler, Rolf Backofen

Algorithms Mol. Biol., 2014

Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research.

Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruehlheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann

Proceedings of the DATA 2014, 2014

2013

The correlation of genome size and DNA methylation rate in metazoans.

Marcus Lechner, Manja Marz, Christian Ihling, Andrea Sinz, Peter F. Stadler, Veiko Krauss

Theory Biosci., 2013

Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures.

Rolf Backofen, Markus Fricke, Manja Marz, Jing Qin, Peter F. Stadler

Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria.

Nicolas Wieseke, Marcus Lechner, Marcus Ludwig, Manja Marz

Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

2011

Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis.

Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska

BMC Bioinform., 2011

RNA-RNA interaction prediction based on multiple sequence alignments.

Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys

Bioinform., 2011

2010

Temperature-Dependent Structural Variability of RNAs: spliced Leader RNAs and their Evolutionary History.

Manja Marz, Nathalie Vanzo, Peter F. Stadler

J. Bioinform. Comput. Biol., 2010

2009

Converting DNA to Music: ComposAlign.

Todd Ingalls, Georg Martius, Manja Marz, Sonja J. Proshaka, Marc Hellmuth

Proceedings of the German Conference on Bioinformatics 2009, 2009

2007

U7 snRNAs: A Computational Survey.

Manja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler

Genom. Proteom. Bioinform., 2007