Martin Middendorf

According to our database1, Martin Middendorf authored at least 160 papers between 1992 and 2019.

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Bibliography

2019
An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements.
IEEE/ACM Trans. Comput. Biology Bioinform., 2019

An Iterated Local Search Algorithm for the Two-Machine Flow Shop Problem with Buffers and Constant Processing Times on One Machine.
Proceedings of the Evolutionary Computation in Combinatorial Optimization, 2019

2018
Genome Rearrangement with ILP.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements.
BMC Bioinformatics, 2018

2017
Phylogenomics with Paralogs.
CoRR, 2017

2016
Simple Probabilistic Population-Based Optimization.
IEEE Trans. Evolutionary Computation, 2016

A Population Based ACO Algorithm for the Combined Tours TSP Problem.
EAI Endorsed Trans. Self-Adaptive Systems, 2016

Population based ant colony optimization for reconstructing ECG signals.
Evolutionary Intelligence, 2016

A Property Preserving Method for Extending a Single-Objective Problem Instance to Multiple Objectives with Specific Correlations.
Proceedings of the Evolutionary Computation in Combinatorial Optimization, 2016

2015
Cophylogenetic Reconciliation with ILP.
IEEE/ACM Trans. Comput. Biology Bioinform., 2015

Decentralized and dynamic group formation of reconfigurable agents.
Memetic Computing, 2015

Task allocation in organic computing systems: networks with reconfigurable helper units.
IJAACS, 2015

Refined ranking relations for selection of solutions in multi objective metaheuristics.
European Journal of Operational Research, 2015

A Visual Method for Analysis and Comparison of Search Landscapes.
Proceedings of the Genetic and Evolutionary Computation Conference, 2015

Evolutionary Inheritance Mechanisms for Multi-criteriaDecision Making in Multi-agent Systems.
Proceedings of the Genetic and Evolutionary Computation Conference, 2015

2014
Challenges in RNA virus bioinformatics.
Bioinformatics, 2014

Comparing the Optimization Behaviour of Heuristics with Topology Based Visualization.
Proceedings of the Theory and Practice of Natural Computing, 2014

The Influence of Correlated Objectives on Different Types of P-ACO Algorithms.
Proceedings of the Evolutionary Computation in Combinatorial Optimisation, 2014

2013
Swarm controlled emergence for ant clustering.
Int. J. Intelligent Computing and Cybernetics, 2013

dPSO-Vis: Topology-based Visualization of Discrete Particle Swarm Optimization.
Comput. Graph. Forum, 2013

Unifying Parsimonious Tree Reconciliation.
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

Self-organized cooperation between agents that have to solve resource collection tasks.
Proceedings of the 2013 IEEE Symposium on Swarm Intelligence, 2013

Simple probabilistic population based optimization for combinatorial optimization.
Proceedings of the 2013 IEEE Symposium on Swarm Intelligence, 2013

A common interval guided ACO algorithm for permutation problems.
Proceedings of the 2013 IEEE Symposium on Swarm Intelligence, 2013

Self-adaptable Group Formation of Reconfigurable Agents in Dynamic Environments.
Proceedings of the Nature Inspired Cooperative Strategies for Optimization (NICSO 2013), 2013

Refined ranking relations for multi objective optimization andapplication to P-ACO.
Proceedings of the Genetic and Evolutionary Computation Conference, 2013

On Weighting Schemes for Gene Order Analysis.
Proceedings of the German Conference on Bioinformatics 2013, 2013

2012
Preserving Inversion Phylogeny Reconstruction.
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

Annotation guided local similarity search in multiple sequences and its application to mitochondrial genomes.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011
Deciding on the wing: in-flight decision making and search space sampling in the red dwarf honeybee Apis florea.
Swarm Intelligence, 2011

Performance evaluation of artificial bee colony optimization and new selection schemes.
Memetic Computing, 2011

Finding all sorting tandem duplication random loss operations.
J. Discrete Algorithms, 2011

Particle swarm optimization for finding RNA secondary structures.
Int. J. Intelligent Computing and Cybernetics, 2011

Learning classifier systems to evolve classification rules for systems of memory constrained components.
Evolutionary Intelligence, 2011

A method for computing an inventory of metazoan mitochondrial gene order rearrangements.
BMC Bioinformatics, 2011

Trophallaxis-inspired self-organized task exchange in heterogeneous swarms.
Proceedings of the 2011 IEEE Symposium on Swarm Intelligence, 2011

Bonding as a swarm: applying bee nest-site selection behaviour to protein docking.
Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

Quick-ACO: Accelerating Ant Decisions and Pheromone Updates in ACO.
Proceedings of the Evolutionary Computation in Combinatorial Optimization, 2011

Ant Inspired Methods for Organic Computing.
Proceedings of the Organic Computing - A Paradigm Shift for Complex Systems, 2011

2010
Multi-level reconfigurable architectures in the switch model.
Journal of Systems Architecture - Embedded Systems Design, 2010

A parameter-adaptive dynamic programming approach for inferring cophylogenies.
BMC Bioinformatics, 2010

Artificial Bee Colony Optimization: A New Selection Scheme and Its Performance.
Proceedings of the Nature Inspired Cooperative Strategies for Optimization, 2010

Sensor Placement in Water Networks Using a Population-Based Ant Colony Optimization Algorithm.
Proceedings of the Computational Collective Intelligence. Technologies and Applications, 2010

Bee Nest Site Selection as an Optimization Process.
Proceedings of the Artificial Life XII: Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, 2010

Models and Algorithms for Hyperreconfigurable Hardware.
Proceedings of the Dynamically Reconfigurable Systems - Architectures, 2010

2009
Editorial Special Issue: Swarm Intelligence.
IEEE Trans. Evolutionary Computation, 2009

Extended shapes for the combinatorial design of RNA sequences.
I. J. Computational Biology and Drug Design, 2009

Adapting to Dynamic Environments: Polyethism in Response Threshold Models for Social Insects.
Advances in Complex Systems, 2009

Self-synchronized duty-cycling for mobile sensor networks with energy harvesting capabilities: A swarm intelligence study.
Proceedings of the 2009 IEEE Swarm Intelligence Symposium, 2009

On the Design of RNA Sequences for Realizing Extended Shapes.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Evolved cooperation and emergent communication structures in learning classifier based organic computing systems.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

09041 Working Group on EMO for Robust Multiobjective Optimization (1st Round).
Proceedings of the Hybrid and Robust Approaches to Multiobjective Optimization, 18.01., 2009

Finding All Sorting Tandem Duplication Random Loss Operations.
Proceedings of the Combinatorial Pattern Matching, 20th Annual Symposium, 2009

2008
Organic Computing and Swarm Intelligence.
Proceedings of the Swarm Intelligence: Introduction and Applications, 2008

Design Aspects of Multi-level Reconfigurable Architectures.
Signal Processing Systems, 2008

Stability and performance of ant queue inspired task partitioning methods.
Theory in Biosciences, 2008

Editorial.
Theory in Biosciences, 2008

Solving the Preserving Reversal Median Problem.
IEEE/ACM Trans. Comput. Biology Bioinform., 2008

Self-Organized Task Allocation for Service Tasks in Computing Systems with Reconfigurable Components.
J. Math. Model. Algorithms, 2008

A decentralization approach for swarm intelligence algorithms in networks applied to multi swarm PSO.
Int. J. Intelligent Computing and Cybernetics, 2008

Creating melodies and baroque harmonies with ant colony optimization.
Int. J. Intelligent Computing and Cybernetics, 2008

Molecular docking with multi-objective Particle Swarm Optimization.
Appl. Soft Comput., 2008

An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree.
Proceedings of the Comparative Genomics, International Workshop, 2008

Congestion Control in Ant Like Moving Agent Systems.
Proceedings of the Biologically-Inspired Collaborative Computing, 2008

Hyperreconfigurable architectures.
Proceedings of the FPL 2008, 2008

Evaluation of Ordering Methods for DNA Sequence Design Based on Ant Colony System.
Proceedings of the Second Asia International Conference on Modelling and Simulation, 2008

Emergent Sorting in Networks of Router Agents.
Proceedings of the Ant Colony Optimization and Swarm Intelligence, 2008

Learning from House-Hunting Ants: Collective Decision-Making in Organic Computing Systems.
Proceedings of the Ant Colony Optimization and Swarm Intelligence, 2008

Self-adaptive Worker-Helper Systems with Self-Organized Task Allocation.
Proceedings of the Organic Computing, 2008

2007
Hardware-oriented ant colony optimization.
Journal of Systems Architecture, 2007

CREx: inferring genomic rearrangements based on common intervals.
Bioinformatics, 2007

Using median sets for inferring phylogenetic trees.
Bioinformatics, 2007

Swarm Controlled Emergence - Designing an Anti-Clustering Ant System.
Proceedings of the 2007 IEEE Swarm Intelligence Symposium, 2007

On Trajectories of Particles in PSO.
Proceedings of the 2007 IEEE Swarm Intelligence Symposium, 2007

A Particle Swarm Optimizer for Finding Minimum Free Energy RNA Secondary Structures.
Proceedings of the 2007 IEEE Swarm Intelligence Symposium, 2007

A Fast and Exact Algorithm for the Perfect Reversal Median Problem.
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

An ant colony optimizer for melody creation with baroque harmony.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007

2006
Genome Rearrangement Based on Reversals that Preserve Conserved Intervals.
IEEE/ACM Trans. Comput. Biology Bioinform., 2006

Modeling Ant Brood ending Patterns with Cellular Automata.
J. Cellular Automata, 2006

A hierarchical particle swarm optimizer for noisy and dynamic environments.
Genetic Programming and Evolvable Machines, 2006

Marco Dorigo and Thomas Stützle, Ant Colony Optimization, MIT Press (2004) ISBN 0-262-04219-3.
European Journal of Operational Research, 2006

Self-organized task allocation for computing systems with reconfigurable components.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Granularity aspects for the design of multi-level reconfigurable architectures.
Proceedings of the 2006 IEEE International Conference on Field Programmable Technology, 2006

Hierarchical Cellular Genetic Algorithm.
Proceedings of the Evolutionary Computation in Combinatorial Optimization, 2006

Using Decentralized Clustering for Task Allocation in Networks with Reconfigurable Helper Units.
Proceedings of the Self-Organizing Systems, First International Workshop, 2006

Cache Architectures for Reconfigurable Hardware.
Proceedings of the 2006 International Conference on Engineering of Reconfigurable Systems & Algorithms, 2006

The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders.
Proceedings of the Computational Life Sciences II, 2006

2005
A hierarchical particle swarm optimizer and its adaptive variant.
IEEE Trans. Systems, Man, and Cybernetics, Part B, 2005

Waiting Strategies for Dynamic Vehicle Routing.
Transportation Science, 2005

Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information.
Theory in Biosciences, 2005

Hyperreconfigurable architectures and the partition into hypercontexts problem.
J. Parallel Distrib. Comput., 2005

On solving permutation scheduling problems with ant colony optimization.
Int. J. Systems Science, 2005

Decentralized packet clustering in router-based networks.
Int. J. Found. Comput. Sci., 2005

Multi task hyperreconfigurable architectures: models and reconfiguration problems.
IJES, 2005

On the design of two-level reconfigurable architectures.
Proceedings of the 2005 International Conference on Reconfigurable Computing and FPGAs, 2005

A Parallel Algorithm for Solving the Reversal Median Problem.
Proceedings of the Parallel Processing and Applied Mathematics, 2005

Flexible Particle Swarm Optimization Tasks for Reconfigurable Processor Arrays.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

Modelling Ant Brood Tending Behavior with Cellular Automata.
Proceedings of the Computational Science, 2005

Heuristics for Context-Caches in 2-Level Reconfigurable Architectures.
Proceedings of the 2005 IEEE International Conference on Field-Programmable Technology, 2005

Counter-Based Ant Colony Optimization as a Hardware-Oriented Meta-heuristic.
Proceedings of the Applications of Evolutionary Computing, 2005

Dynamic Decentralized Packet Clustering in Networks.
Proceedings of the Applications of Evolutionary Computing, 2005

2004
Combined super-/substring and super-/subsequence problems.
Theor. Comput. Sci., 2004

Editorial.
J. Math. Model. Algorithms, 2004

FPGA implementation of population-based ant colony optimization.
Appl. Soft Comput., 2004

Dynamic Polyethism and Competition for Tasks in Threshold Reinforcement Models of Social Insects.
Adaptive Behaviour, 2004

Decentralized Packet Clustering in Networks.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

Models and Reconfiguration Problems for Multi Task Hyperreconfigurable Architectures.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

The Partition into Hypercontexts Problem for Hyperreconfigurable Architectures.
Proceedings of the Field Programmable Logic and Application, 2004

Hyperreconfigurable Architectures for Fast Run Time Reconfiguration.
Proceedings of the 12th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2004), 2004

A Hierarchical Particle Swarm Optimizer for Dynamic Optimization Problems.
Proceedings of the Applications of Evolutionary Computing, 2004

Hyperreconfigurable Architectures as Flexible Control Systems.
Proceedings of the ARCS 2004, 2004

Time-Scattered Heuristic for the Hardware Implementation of Population-Based ACO.
Proceedings of the Ant Colony Optimization and Swarm Intelligence, 2004

Competition Controlled Pheromone Update for Ant Colony Optimization.
Proceedings of the Ant Colony Optimization and Swarm Intelligence, 2004

2003
On Enforced Convergence of ACO and its Implementation on the Reconfigurable Mesh Architecture Using Size Reduction Tasks.
The Journal of Supercomputing, 2003

Ant Colony Optimization with Global Pheromone Evaluation for Scheduling a Single Machine.
Appl. Intell., 2003

Solving Multi-criteria Optimization Problems with Population-Based ACO.
Proceedings of the Evolutionary Multi-Criterion Optimization, 2003

2002
Ant colony optimization for resource-constrained project scheduling.
IEEE Trans. Evolutionary Computation, 2002

Guest editorial: special section on ant colony optimization.
IEEE Trans. Evolutionary Computation, 2002

An Evolutionary Approach to Dynamic Task Scheduling on FPGAs with Restricted Buffer.
J. Parallel Distrib. Comput., 2002

Width-restricted layering of acyclic digraphs with consideration of dummy nodes.
Inf. Process. Lett., 2002

Multi Colony Ant Algorithms.
J. Heuristics, 2002

Fast Ant Colony Optimization on Runtime Reconfigurable Processor Arrays.
Genetic Programming and Evolvable Machines, 2002

Modeling the Dynamics of Ant Colony Optimization.
Evolutionary Computation, 2002

Studies On The Dynamics Of Ant Colony Optimization Algorithms.
Proceedings of the GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, 2002

Population based ant colony optimization on FPGA.
Proceedings of the 2002 IEEE International Conference on Field-Programmable Technology, 2002

Ant Colony Optimization with the Relative Pheromone Evaluation Method.
Proceedings of the Applications of Evolutionary Computing, 2002

A Population Based Approach for ACO.
Proceedings of the Applications of Evolutionary Computing, 2002

Modelling ACO: Composed Permutation Problems.
Proceedings of the Ant Algorithms, Third International Workshop, 2002

Applying Population Based ACO to Dynamic Optimization Problems.
Proceedings of the Ant Algorithms, Third International Workshop, 2002

2001
Fast ant colony optimization on reconfigurable processor arrays.
Proceedings of the 15th International Parallel & Distributed Processing Symposium (IPDPS-01), 2001

A New Approach to Solve Permutation Scheduling Problems with Ant Colony Optimization.
Proceedings of the Applications of Evolutionary Computing, 2001

Pheromone Modification Strategies for Ant Algorithms Applied to Dynamic TSP.
Proceedings of the Applications of Evolutionary Computing, 2001

Bi-Criterion Optimization with Multi Colony Ant Algorithms.
Proceedings of the Evolutionary Multi-Criterion Optimization, 2001

2000
Information Exchange in Multi Colony Ant Algorithms.
Proceedings of the Parallel and Distributed Processing, 2000

Ant Colony Optimization for Resource-Constrained Projet Scheduling.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

Task Rearrangement on Partially Reconfigurable FPGAs with Restricted Buffer.
Proceedings of the Field-Programmable Logic and Applications, 2000

An Ant Algorithm with a New Pheromone Evaluation Rule for Total Tardiness Problems.
Proceedings of the Real-World Applications of Evolutionary Computing, 2000

1999
Multiplication of Matrices With Different Sparseness Properties on Dynamically Reconfigurable Meshes.
VLSI Design, 1999

Scheduling Inverse Trees Under the Communication Model of the LogP-Machine.
Theor. Comput. Sci., 1999

Transversal Graphs for Partially Ordered Sets: Sequencing, Merging and Scheduling Problems.
J. Comb. Optim., 1999

Bit Summation on the Reconfigurable Mesh.
Proceedings of the Parallel and Distributed Processing, 1999

1998
Shortest Common Superstrings and Scheduling with Coordinated Starting Times.
Theor. Comput. Sci., 1998

Matrix Multiplication on Processor Arrays with Optical Buses.
Informatica (Slovenia), 1998

An Island Model Based Ant System with Lookahead for the Shortest Supersequence Problem.
Proceedings of the Parallel Problem Solving from Nature, 1998

A Simulator for the Reconfigurable Mesh Architecture.
Proceedings of the Parallel and Distributed Processing, 10 IPPS/SPDP'98 Workshops Held in Conjunction with the 12th International Parallel Processing Symposium and 9th Symposium on Parallel and Distributed Processing, Orlando, Florida, USA, March 30, 1998

On Optimal k-linear Scheduling of Tree-Like Graphs for LogP-Machines.
Proceedings of the Euro-Par '98 Parallel Processing, 1998

1996
Two-Dimensional Partitioning Problems.
Theor. Comput. Sci., 1996

Maximal Common Subsequences and Minimal Common Supersequences.
Inf. Comput., 1996

On Physical Mapping and the Consecutive Ones Property for Sparse Matrices.
Discrete Applied Mathematics, 1996

Manhattan Channel Routing is NP-complete Under Truly Restricted Settings.
Chicago J. Theor. Comput. Sci., 1996

1995
On Finding Minimal, Maximal, and Consistent Sequences over a Binary Alphabet.
Theor. Comput. Sci., 1995

Sparse Matrix Multiplication on a Reconfigurable Mesh.
Australian Computer Journal, 1995

1994
More on the Complexity of Common Superstring and Supersequence Problems.
Theor. Comput. Sci., 1994

On the Approximation of Finding Various Minimal, Maximal, and Consistent Sequences.
Proceedings of the Algorithms and Computation, 5th International Symposium, 1994

1993
The Shortest Common Nonsubsequence Problem is NP-Complete.
Theor. Comput. Sci., 1993

Problem Heaps and Their Evaluation.
Parallel Processing Letters, 1993

Minimum Broadcast Time is NP-Complete for 3-Regular Planar Graphs and Deadline 2.
Inf. Process. Lett., 1993

1992
Zur Komplexität von Einbettungsproblemen für Wortmengen.
PhD thesis, 1992

Indexed counter languages.
ITA, 1992


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