Ewan Birney

According to our database1, Ewan Birney authored at least 73 papers between 1997 and 2021.

Collaborative distances:

Timeline

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Bibliography

2021
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.
Nucleic Acids Res., 2021

2020
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences.
Nucleic Acids Res., 2020

2019
The European Bioinformatics Institute in 2018: tools, infrastructure and training.
Nucleic Acids Res., 2019

htsget: a protocol for securely streaming genomic data.
Bioinform., 2019

2018
ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.
PLoS Comput. Biol., 2018

The European Bioinformatics Institute in 2017: data coordination and integration.
Nucleic Acids Res., 2018

PhenotypeSimulator: A comprehensive framework for simulating multi-trait, multi-locus genotype to phenotype relationships.
Bioinform., 2018

2017
Open Targets: a platform for therapeutic target identification and validation.
Nucleic Acids Res., 2017

2016
Ensembl 2016.
Nucleic Acids Res., 2016

The European Bioinformatics Institute in 2016: Data growth and integration.
Nucleic Acids Res., 2016

Ensembl regulation resources.
Database J. Biol. Databases Curation, 2016

2015
Ensembl 2015.
Nucleic Acids Res., 2015

2014
Ensembl 2014.
Nucleic Acids Res., 2014

The Reactome pathway knowledgebase.
Nucleic Acids Res., 2014

The European Bioinformatics Institute's data resources 2014.
Nucleic Acids Res., 2014

The EBI RDF platform: linked open data for the life sciences.
Bioinform., 2014

2013
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.
Nat., 2013

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
Nucleic Acids Res., 2013

Ensembl 2013.
Nucleic Acids Res., 2013

2012
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.
Nucleic Acids Res., 2012

Ensembl 2012.
Nucleic Acids Res., 2012

Major submissions tool developments at the European nucleotide archive.
Nucleic Acids Res., 2012

<i>Oases: </i> robust <i>de novo</i> RNA-seq assembly across the dynamic range of expression levels.
Bioinform., 2012

2011
The European Nucleotide Archive.
Nucleic Acids Res., 2011

Ensembl 2011.
Nucleic Acids Res., 2011

Reactome: a database of reactions, pathways and biological processes.
Nucleic Acids Res., 2011

2010
EMMA - mouse mutant resources for the international scientific community.
Nucleic Acids Res., 2010

Improvements to services at the European Nucleotide Archive.
Nucleic Acids Res., 2010

Ensembl Genomes: Extending Ensembl across the taxonomic space.
Nucleic Acids Res., 2010

Ensembl's 10th year.
Nucleic Acids Res., 2010

A database and API for variation, dense genotyping and resequencing data.
BMC Bioinform., 2010

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.
Database J. Biol. Databases Curation, 2010

The systematic annotation of the three main GPCR families in Reactome.
Database J. Biol. Databases Curation, 2010

2009
Reactome knowledgebase of human biological pathways and processes.
Nucleic Acids Res., 2009

VectorBase: a data resource for invertebrate vector genomics.
Nucleic Acids Res., 2009

Ensembl 2009.
Nucleic Acids Res., 2009

MAPU 2.0: high-accuracy proteomes mapped to genomes.
Nucleic Acids Res., 2009

Petabyte-scale innovations at the European Nucleotide Archive.
Nucleic Acids Res., 2009

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.
Bioinform., 2009

2008
Advanced Genomic Data Mining.
PLoS Comput. Biol., 2008

Ensembl 2008.
Nucleic Acids Res., 2008

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.
Nucleic Acids Res., 2008

The HGNC Database in 2008: a resource for the human genome.
Nucleic Acids Res., 2008

Integrating biological data - the Distributed Annotation System.
BMC Bioinform., 2008

ENFIN - An Integrative Structure for Systems Biology.
Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008

2007
VectorBase: a home for invertebrate vectors of human pathogens.
Nucleic Acids Res., 2007

Ensembl 2007.
Nucleic Acids Res., 2007

Reactome: An integrated expert model of human molecular processes and access toolkit.
J. Integr. Bioinform., 2007

Optimising oligonucleotide array design for ChIP-on-chip.
BMC Bioinform., 2007

Optimized design and assessment of whole genome tiling arrays.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
Ensembl 2006.
Nucleic Acids Res., 2006

Reactome - A Knowledgebase of Biological Pathways.
Proceedings of the On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops, 2006

The Distributed Annotation System for Integration of Biological Data.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005
Reactome: a knowledgebase of biological pathways.
Nucleic Acids Res., 2005

Ensembl 2005.
Nucleic Acids Res., 2005

Automated generation of heuristics for biological sequence comparison.
BMC Bioinform., 2005

Gene finding in the chicken genome.
BMC Bioinform., 2005

2004
Ensembl 2004.
Nucleic Acids Res., 2004

Biological database design and implementation.
Briefings Bioinform., 2004

2003
Ensembl 2002: accommodating comparative genomics.
Nucleic Acids Res., 2003

The European Bioinformatics Institute's data resources.
Nucleic Acids Res., 2003

2002
The Ensembl genome database project.
Nucleic Acids Res., 2002

The Pfam Protein Families Database.
Nucleic Acids Res., 2002

2001
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

Hidden Markov models in biological sequence analysis.
IBM J. Res. Dev., 2001

Ensembl: Annotating metazoan genomes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

2000
The Pfam Protein Families Database.
Nucleic Acids Res., 2000

ProtEST: protein multiple sequence alignments from expressed sequence tags.
Bioinform., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000

1999
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Nucleic Acids Res., 1999

1998
Pfam: multiple sequence alignments and HMM-profiles of protein domains.
Nucleic Acids Res., 1998

SPEM: a parser for EMBL style flat file database entries.
Bioinform., 1998

1997
Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997


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