Rolf Apweiler

Orcid: 0000-0001-7078-200X

According to our database1, Rolf Apweiler authored at least 106 papers between 1996 and 2022.

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Bibliography

2022
The European Bioinformatics Institute (EMBL-EBI) in 2021.
Nucleic Acids Res., 2022

2021
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Nucleic Acids Res., 2021

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.
Nucleic Acids Res., 2021

2020
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences.
Nucleic Acids Res., 2020

2019
The European Bioinformatics Institute in 2018: tools, infrastructure and training.
Nucleic Acids Res., 2019

2018
The European Bioinformatics Institute in 2017: data coordination and integration.
Nucleic Acids Res., 2018

2016
The European Bioinformatics Institute in 2016: Data growth and integration.
Nucleic Acids Res., 2016

2014
The European Bioinformatics Institute's data resources 2014.
Nucleic Acids Res., 2014

2013
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.
Database J. Biol. Databases Curation, 2013

2012
InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res., 2012

The UniProt-GO Annotation database in 2011.
Nucleic Acids Res., 2012

2010
On the Importance of Comprehensible Classification Models for Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Make Research Data Public?---Not Always so Simple: A Dialogue for Statisticians and Science Editors
CoRR, 2010

2009
InterPro: the integrative protein signature database.
Nucleic Acids Res., 2009

The GOA database in 2009 - an integrated Gene Ontology Annotation resource.
Nucleic Acids Res., 2009

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
Bioinform., 2009

QuickGO: a web-based tool for Gene Ontology searching.
Bioinform., 2009

QuickGO: a user tutorial for the web-based Gene Ontology browser.
Database J. Biol. Databases Curation, 2009

Verification of Uncurated Protein Annotations.
Proceedings of the Information Retrieval in Biomedicine, 2009

2008
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.
Nucleic Acids Res., 2008

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.
Nucleic Acids Res., 2008

UniProtJAPI: a remote API for accessing UniProt data.
Bioinform., 2008

2007
New developments in the InterPro database.
Nucleic Acids Res., 2007

EMBL Nucleotide Sequence Database in 2006.
Nucleic Acids Res., 2007

IntAct - open source resource for molecular interaction data.
Nucleic Acids Res., 2007

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.
BMC Bioinform., 2007

Analysing latent topics in large-scale proteomics.
Proceedings of the LWA 2007: Lernen - Wissen, 2007

An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases.
Proceedings of the German Conference on Bioinformatics, 2007

2006
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res., 2006

PRIDE: a public repository of protein and peptide identifications for the proteomics community.
Nucleic Acids Res., 2006

EMBL Nucleotide Sequence Database: developments in 2005.
Nucleic Acids Res., 2006

The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.
BMC Bioinform., 2006

UniSave: the UniProtKB Sequence/Annotation Version database.
Bioinform., 2006

2005
E-MSD: an integrated data resource for bioinformatics.
Nucleic Acids Res., 2005

InterProScan: protein domains identifier.
Nucleic Acids Res., 2005

InterPro, progress and status in 2005.
Nucleic Acids Res., 2005

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Nucleic Acids Res., 2005

The EMBL Nucleotide Sequence Database.
Nucleic Acids Res., 2005

The Universal Protein Resource (UniProt).
Nucleic Acids Res., 2005

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
BMC Bioinform., 2005

The predictive power of the CluSTr database.
Bioinform., 2005

Dasty and UniProt DAS: a perfect pair for protein feature visualization.
Bioinform., 2005

Do you do text?
Bioinform., 2005

The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments.
Proceedings of the Biocomputing 2005, 2005

Biological Databases: Infrastructure, Content and Integration.
Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005

2004
The EMBL Nucleotide Sequence Database.
Nucleic Acids Res., 2004

IntAct: an open source molecular interaction database.
Nucleic Acids Res., 2004

IntEnz, the integrated relational enzyme database.
Nucleic Acids Res., 2004

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Nucleic Acids Res., 2004

UniProt: the Universal Protein knowledgebase.
Nucleic Acids Res., 2004

Integrating Genomic and Proteomic Data: The Integr8 Project.
J. Integr. Bioinform., 2004

Synergy between medical informatics and bioinformatics: facilitating genomic medicine for future health care.
J. Biomed. Informatics, 2004

The Integr8 project - a resource for genomic and proteomic data.
Silico Biol., 2004

GOA? - Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.
Silico Biol., 2004

UniProt archive.
Bioinform., 2004

Filtering erroneous protein annotation.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.
Nucleic Acids Res., 2003

The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res., 2003

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.
Nucleic Acids Res., 2003

The European Bioinformatics Institute's data resources.
Nucleic Acids Res., 2003

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic Acids Res., 2003

The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase.
Silico Biol., 2003

2002
Organisation and standardisation of information in SWISS_PROT and TrEMBL.
Data Sci. J., 2002

Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins.
Comput. Chem., 2002

The EBI SRS server-new features.
Bioinform., 2002

The EBI SRS server-recent developments.
Bioinform., 2002

Erratum: Evaluation of methods for the prediction of membrane spanning regions.
Bioinform., 2002

Interactive InterPro-based comparisons of proteins in whole genomes.
Bioinform., 2002

High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL.
Briefings Bioinform., 2002

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002

Applications of InterPro in Protein Annotation and Genome Analysis.
Briefings Bioinform., 2002

Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis.
Proceedings of the Gene Regulations and Metabolism - Postgenomic Computational Approaches, 2002

Bioinformatics: Using the Molecular Biology Data.
Proceedings of the Essentials of Genomics and Bioinformatics, 2002

2001
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.
Nucleic Acids Res., 2001

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.
Nucleic Acids Res., 2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

InterProScan - an integration platform for the signature-recognition methods in InterPro.
Bioinform., 2001

Evaluation of methods for the prediction of membrane spanning regions.
Bioinform., 2001

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.
Bioinform., 2001

Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.
Bioinform., 2001

Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences.
Briefings Bioinform., 2001

Towards a New Curation Environment for the TrEMBL Database.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

IntEnz - The Enzyme Database in Oracle.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

2000
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic Acids Res., 2000

A collection of well characterised integral membrane proteins.
Bioinform., 2000

A comparison of signal sequence prediction methods using a test set of signal peptides.
Bioinform., 2000

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
Bioinform., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

1999
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
Nucleic Acids Res., 1999

Removing redundancy in SWISS-PROT and TrEMBL.
Bioinform., 1999

EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation.
Bioinform., 1999

Representation of functional information in the SWISS-PROT Data Bank.
Bioinform., 1999

Swissknife - 'lazy parsing' of SWISS-PROT entries.
Bioinform., 1999

A novel method for automatic functional annotation of proteins.
Bioinform., 1999

Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation.
Proceedings of the German Conference on Bioinformatics, 1999

Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT.
Proceedings of the German Conference on Bioinformatics, 1999

1998
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
Nucleic Acids Res., 1998

SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world.
Proceedings of the German Conference on Bioinformatics, 1998

A novel method for automatic and reliable functional annotation of proteins.
Proceedings of the German Conference on Bioinformatics, 1998

1997
The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
Nucleic Acids Res., 1997

Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1996
The SWISS-PROT protein sequence data bank and its new supplement TREMBL.
Nucleic Acids Res., 1996

New Developments in the Linking of Biological Databases and Computer-Generation of Annotation.
Proceedings of the German Conference on Bioinformatics, 1996

New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996


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