James P. Sluka

According to our database, James P. Sluka authored at least 10 papers between 2012 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Modelling the spatiotemporal dynamics of senescent cells in wound healing, chronic wounds, and fibrosis.

Sharmilla Chandrasegaran, James P. Sluka, Daryl P. Shanley

PLoS Comput. Biol., 2025

2024

MOTHER-DB: A Database for Sharing Nonhuman Ovarian Histology Images.

Suzanne W. Dietrich, Wenli Ma, Yian Ding, Karen H. Watanabe, Mary B. Zelinski, James P. Sluka

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

2023

Tissue Forge: Interactive biological and biophysics simulation environment.

T. J. Sego, James P. Sluka, Herbert M. Sauro, James A. Glazier

PLoS Comput. Biol., October, 2023

2021

Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations.

Javier Quetzalcóatl Toledo-Marín, Geoffrey C. Fox, James P. Sluka, James A. Glazier

CoRR, 2021

2020

Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies.

Katy Börner, Ellen M. Quardokus, Bruce William Herr II, Leonard E. Cross, Elizabeth G. Record, Yingnan Ju, Andreas D. Bueckle, James P. Sluka, Jonathan C. Silverstein, Kristen M. Browne, Sanjay Jain, Clive H. Wasserfall, Marda L. Jorgensen, Jeffrey M. Spraggins, Nathan Heath Patterson, Mark A. Musen, Griffin M. Weber

CoRR, 2020

2019

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson

Nat., 2019

Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation.

Geoffrey C. Fox, James A. Glazier, J. C. S. Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre T. Somogyi, Madhav V. Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, Shantenu Jha

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

2016

Formalizing knowledge in multi-scale agent-based simulations.

Endre T. Somogyi, James P. Sluka, James A. Glazier

Proceedings of the ACM/IEEE 19th International Conference on Model Driven Engineering Languages and Systems, 2016

2014

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.

James P. Sluka, Abbas Shirinifard, Maciej Swat, Alin Cosmanescu, Randy W. Heiland, James A. Glazier

Bioinform., 2014

2012

Visualizing cells and their connectivity graphs for CompuCell3D.

Randy W. Heiland, Abbas Shirinifard, Maciej Swat, Gilberto L. Thomas, James P. Sluka, Andrew Lumsdaine, Benjamin Zaitlen, James A. Glazier

Proceedings of the 2012 IEEE Symposium on Biological Data Visualization, 2012