James A. Glazier

According to our database1, James A. Glazier authored at least 32 papers between 2003 and 2021.

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Bibliography

2021
Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics.
PLoS Comput. Biol., 2021

Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations.
CoRR, 2021

Using Deep LSD to build operators in GANs latent space with meaning in real space.
CoRR, 2021

2020
A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.
PLoS Comput. Biol., 2020

2019
Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

2018
Qualitative Findings from Study of Interdisciplinary Education in Computational Modeling for Life Sciences Student Researchers from Emerging Research Institutions.
Proceedings of the IEEE Frontiers in Education Conference, 2018

Factors Mediating Learning and Application of Computational Modeling by Life Scientists.
Proceedings of the IEEE Frontiers in Education Conference, 2018

2017
A modeling and simulation language for biological cells with coupled mechanical and chemical processes.
Proceedings of the Symposium on Theory of Modeling & Simulation, Virginia Beach, VA, USA, April 23, 2017

Structural coupling of a Potts model cell.
Proceedings of the Fourteenth European Conference Artificial Life, 2017

2016
Progression of Diabetic Capillary Occlusion: A Model.
PLoS Comput. Biol., 2016

Filopodial-Tension Model of Convergent-Extension of Tissues.
PLoS Comput. Biol., 2016

Towards a multi-scale agent-based programming language methodology.
Proceedings of the Winter Simulation Conference, 2016

Formalizing knowledge in multi-scale agent-based simulations.
Proceedings of the ACM/IEEE 19th International Conference on Model Driven Engineering Languages and Systems, 2016

2015
libRoadRunner: a high performance SBML simulation and analysis library.
Bioinform., 2015

2014
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.
Bioinform., 2014

2012
Label-Free Microcavity Biosensors: Steps towards Personalized Medicine.
Sensors, 2012

Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study.
PLoS Comput. Biol., 2012

Visualizing cells and their connectivity graphs for CompuCell3D.
Proceedings of the 2012 IEEE Symposium on Biological Data Visualization, 2012

2011
A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation.
PLoS Comput. Biol., 2011

2010
Computer Simulation of Cellular Patterning Within the <i>Drosophila</i> Pupal Eye.
PLoS Comput. Biol., 2010

Workflows for parameter studies of multi-cell modeling.
Proceedings of the 2010 Spring Simulation Multiconference, 2010

2008
Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth.
PLoS Comput. Biol., 2008

2007
From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development.
Comput. Sci. Eng., 2007

A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis.
Comput. Phys. Commun., 2007

2006
A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis.
Proceedings of the Cellular Automata, 2006

2005
A Framework for Three-Dimensional Simulation of Morphogenesis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2005

Special Issue on Multiscale Modeling in Biology.
Multiscale Model. Simul., 2005

2004
COMPUCELL, a multi-model framework for simulation of morphogenesis.
Bioinform., 2004

Cell-Oriented Modeling of In Vitro Capillary Development.
Proceedings of the Cellular Automata, 2004

A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb.
Proceedings of the Cellular Automata, 2004

2003
Multi-model Simulations of Chicken Limb Morphogenesis.
Proceedings of the Computational Science - ICCS 2003, 2003

On Cellular Automaton Approaches to Modeling Biological Cells.
Proceedings of the Mathematical Systems Theory in Biology, 2003


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