Yves Van de Peer
Orcid: 0000-0003-4327-3730
According to our database1,
Yves Van de Peer
authored at least 87 papers
between 1993 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
syntenet: an R/Bioconductor package for the inference and analysis of synteny networks.
Bioinform., January, 2023
2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
BMC Bioinform., 2019
Illumina error correction near highly repetitive DNA regions improves de novo genome assembly.
BMC Bioinform., 2019
wgd - simple command line tools for the analysis of ancient whole-genome duplications.
Bioinform., 2019
2018
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics.
Nucleic Acids Res., 2018
BMC Bioinform., 2018
2017
Evaluation of the impact of Illumina error correction tools on de novo genome assembly.
BMC Bioinform., 2017
Proceedings of the 3rd IEEE International Conference on Cybernetics, 2017
2016
Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks.
BMC Bioinform., 2016
Cell line name recognition in support of the identification of synthetic lethality in cancer from text.
Bioinform., 2016
Algorithms Mol. Biol., 2016
2015
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis.
BMC Bioinform., December, 2015
The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015
2014
Bioinform., 2014
2013
Using novel bio-inspired principles to improve adaptability of evolutionary robots in dynamically changing environments.
Proceedings of the Twelfth European Conference on the Synthesis and Simulation of Living Systems: Advances in Artificial Life, 2013
Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures.
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013
EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
2012
BMC Bioinform., 2012
Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations.
Adv. Bioinformatics, 2012
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012
2011
Peakbin Selection in Mass Spectrometry Data Using a Consensus Approach with Estimation of Distribution Algorithms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers.
Comput. Intell., 2011
BMC Bioinform., 2011
Bioinform., 2011
Bioinform., 2011
Proceedings of the 2011 IEEE Symposium on Intelligent Agent, 2011
EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011
2010
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010
BMC Bioinform., 2010
Discriminative and informative features for biomolecular text mining with ensemble feature selection.
Bioinform., 2010
Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.
Bioinform., 2010
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bioinform., 2010
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods.
Bioinform., 2010
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010
2009
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks.
BMC Syst. Biol., 2009
Module networks revisited: computational assessment and prioritization of model predictions.
Bioinform., 2009
Proceedings of the IEEE Congress on Evolutionary Computation, 2009
Analyzing text in search of bio-molecular events: a high-precision machine learning framework.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009
2008
Proceedings of the Third Workshop on New Challenges for Feature Selection in Data Mining and Knowledge Discovery, 2008
Bioinform., 2008
i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.
Bioinform., 2008
Analysis of a Gibbs sampler method for model-based clustering of gene expression data.
Bioinform., 2008
FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.
Bioinform., 2008
BioData Min., 2008
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2008
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
2007
BMC Bioinform., 2007
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation.
BMC Bioinform., 2007
In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists.
Bioinform., 2007
Predicting Human Immunodeficiency Virus (HIV) Drug Resistance Using Recurrent Neural Networks.
Proceedings of the Bio-inspired Modeling of Cognitive Tasks, 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
Enhancing Coding Potential Prediction for Short Sequences Using Complementary Sequence Features and Feature Selection.
Proceedings of the Knowledge Discovery and Emergent Complexity in Bioinformatics, 2006
Proceedings of the 1st International Conference on Scalable Information Systems, 2006
Proceedings of the Progress in Pattern Recognition, 2006
Proceedings of the Towards a New Evolutionary Computation, 2006
2005
SpliceMachine: predicting splice sites from high-dimensional local context representations.
Bioinform., 2005
2004
Feature selection for splice site prediction: A new method using EDA-based feature ranking.
BMC Bioinform., 2004
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
Bioinform., 2004
Digging into Acceptor Splice Site Prediction: An Iterative Feature Selection Approach.
Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004
2003
Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003
2002
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.
Nucleic Acids Res., 2002
Feature subset selection for splice site prediction.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
2000
1999
1998
1997
Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites.
Comput. Appl. Biosci., 1997
1996
1994
TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment.
Comput. Appl. Biosci., 1994
1993
Comput. Appl. Biosci., 1993