Yvan Saeys

Orcid: 0000-0002-0415-1506

According to our database1, Yvan Saeys authored at least 94 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
An Introduction to Adversarially Robust Deep Learning.
IEEE Trans. Pattern Anal. Mach. Intell., April, 2024

2023
GroupEnc: encoder with group loss for global structure preservation.
CoRR, 2023

Topologically Regularized Data Embeddings.
CoRR, 2023

Efficient Approximation of Asymmetric Shapley Values Using Functional Decomposition.
Proceedings of the Machine Learning and Knowledge Extraction, 2023

2022
PDD-SHAP: Fast Approximations for Shapley Values using Functional Decomposition.
CoRR, 2022

Evaluating Feature Attribution Methods in the Image Domain.
CoRR, 2022

BioSegment: Active Learning segmentation for 3D electron microscopy imaging.
Proceedings of the Workshop on Interactive Adaptive Learning co-located with European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2022), 2022

Topologically Regularized Data Embeddings.
Proceedings of the Tenth International Conference on Learning Representations, 2022

Distilling Deep RL Models Into Interpretable Neuro-Fuzzy Systems.
Proceedings of the IEEE International Conference on Fuzzy Systems, 2022

The Curse Revisited: When are Distances Informative for the Ground Truth in Noisy High-Dimensional Data?
Proceedings of the International Conference on Artificial Intelligence and Statistics, 2022

2021
Stable topological signatures for metric trees through graph approximations.
Pattern Recognit. Lett., 2021

SCMFTS: Scalable and Distributed Complexity Measures and Features for Univariate and Multivariate Time Series in Big Data Environments.
Int. J. Comput. Intell. Syst., 2021

The Curse Revisited: a Newly Quantified Concept of Meaningful Distances for Learning from High-Dimensional Noisy Data.
CoRR, 2021

A study on the calibration of fingerprint classifiers.
Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2020
Mining Topological Structure in Graphs through Forest Representations.
J. Mach. Learn. Res., 2020

Detecting adversarial manipulation using inductive Venn-ABERS predictors.
Neurocomputing, 2020

Regional Image Perturbation Reduces L<sub>p</sub> Norms of Adversarial Examples While Maintaining Model-to-model Transferability.
CoRR, 2020

TinGa: fast and flexible trajectory inference with Growing Neural Gas.
Bioinform., 2020

Robust unsupervised dimensionality reduction based on feature clustering for single-cell imaging data.
Appl. Soft Comput., 2020

Asynchronous Processing for Latent Fingerprint Identification on Heterogeneous CPU-GPU Systems.
IEEE Access, 2020

Graph Approximations to Geodesics on Metric Graphs.
Proceedings of the 25th International Conference on Pattern Recognition, 2020

2019
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Weight selection strategies for ordered weighted average based fuzzy rough sets.
Inf. Sci., 2019

Domain Adaptive Segmentation In Volume Electron Microscopy Imaging.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Detecting adversarial examples with inductive Venn-ABERS predictors.
Proceedings of the 27th European Symposium on Artificial Neural Networks, 2019

Cost-Efficient Segmentation of Electron Microscopy Images Using Active Learning.
Proceedings of the 31st Benelux Conference on Artificial Intelligence (BNAIC 2019) and the 28th Belgian Dutch Conference on Machine Learning (Benelearn 2019), 2019

Calibrated Multi-Probabilistic Prediction as a Defense against Adversarial Attacks.
Proceedings of the 31st Benelux Conference on Artificial Intelligence (BNAIC 2019) and the 28th Belgian Dutch Conference on Machine Learning (Benelearn 2019), 2019

Classification of Human White Blood Cells Using Machine Learning for Stain-Free Imaging Flow Cytometry.
Proceedings of the 31st Benelux Conference on Artificial Intelligence (BNAIC 2019) and the 28th Belgian Dutch Conference on Machine Learning (Benelearn 2019), 2019

Distillation of Deep Reinforcement Learning Models Using Fuzzy Inference Systems.
Proceedings of the 31st Benelux Conference on Artificial Intelligence (BNAIC 2019) and the 28th Belgian Dutch Conference on Machine Learning (Benelearn 2019), 2019

Distributed, Numerically Stable Distance and Covariance Computation with MPI for Extremely Large Datasets.
Proceedings of the 2019 IEEE International Congress on Big Data, 2019

2018
Dynamic affinity-based classification of multi-class imbalanced data with one-versus-one decomposition: a fuzzy rough set approach.
Knowl. Inf. Syst., 2018

Multi-label classification using a fuzzy rough neighborhood consensus.
Inf. Sci., 2018

On the use of convolutional neural networks for robust classification of multiple fingerprint captures.
Int. J. Intell. Syst., 2018

TISRover: ConvNets learn biologically relevant features for effective translation initiation site prediction.
Int. J. Data Min. Bioinform., 2018

SpliceRover: interpretable convolutional neural networks for improved splice site prediction.
Bioinform., 2018

Local Topological Data Analysis to Uncover the Global Structure of Data Approaching Graph-Structured Topologies.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2018

2017
ConTra v3: a tool to identify transcription factor binding sites across species, update 2017.
Nucleic Acids Res., 2017

Distributed incremental fingerprint identification with reduced database penetration rate using a hierarchical classification based on feature fusion and selection.
Knowl. Based Syst., 2017

Fingerprint classification with a new deep neural network model: robustness for different captures of the same fingerprints.
CoRR, 2017

Lower bounds on the robustness to adversarial perturbations.
Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

Convolutional neural network pruning to accelerate membrane segmentation in electron microscopy.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Interpretable convolutional neural networks for effective translation initiation site prediction.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Fuzzy Multi-Instance Classifiers.
IEEE Trans. Fuzzy Syst., 2016

Fuzzy rough classifiers for class imbalanced multi-instance data.
Pattern Recognit., 2016

EPRENNID: An evolutionary prototype reduction based ensemble for nearest neighbor classification of imbalanced data.
Neurocomputing, 2016

Netter: re-ranking gene network inference predictions using structural network properties.
BMC Bioinform., 2016

Improving nearest neighbor classification using Ensembles of Evolutionary Generated Prototype Subsets.
Appl. Soft Comput., 2016

Machine Learning Challenges for Single Cell Data.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2016

Fuzzy rough sets for self-labelling: An exploratory analysis.
Proceedings of the 2016 IEEE International Conference on Fuzzy Systems, 2016

Bayesian deconvolution of scanning electron microscopy images using point-spread function estimation and non-local regularization.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Decreasing Time Consumption of Microscopy Image Segmentation Through Parallel Processing on the GPU.
Proceedings of the Advanced Concepts for Intelligent Vision Systems, 2016

2015
Applications of Fuzzy Rough Set Theory in Machine Learning: a Survey.
Fundam. Informaticae, 2015

Semi-Supervised Fuzzy-Rough Feature Selection.
Proceedings of the Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing, 2015

Distributed fuzzy rough prototype selection for Big Data regression.
Proceedings of the 2015 Annual Conference of the North American Fuzzy Information Processing Society (NAFIPS) held jointly with 2015 5th World Conference on Soft Computing (WConSC), 2015

Fuzzy Rough Set Prototype Selection for Regression.
Proceedings of the 2015 IEEE International Conference on Fuzzy Systems, 2015

Unsupervised Trajectory Inference Using Graph Mining.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

Evolutionary undersampling for imbalanced big data classification.
Proceedings of the IEEE Congress on Evolutionary Computation, 2015

2014
Noise Analysis and Removal in 3D Electron Microscopy.
Proceedings of the Advances in Visual Computing - 10th International Symposium, 2014

Complex Aggregates over Clusters of Elements.
Proceedings of the Inductive Logic Programming - 24th International Conference, 2014

2012
Statistical interpretation of machine learning-based feature importance scores for biomarker discovery.
Bioinform., 2012

SBFC: An Efficient Feature Frequency-Based Approach to Tackle Cross-Lingual Word Sense Disambiguation.
Proceedings of the Text, Speech and Dialogue - 15th International Conference, 2012

2011
Peakbin Selection in Mass Spectrometry Data Using a Consensus Approach with Estimation of Distribution Algorithms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers.
Comput. Intell., 2011

A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.
Bioinform., 2011

An alternative approach to avoid overfitting for surrogate models.
Proceedings of the Winter Simulation Conference 2011, 2011

2010
Event based text mining for integrated network construction.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

Highlights of the BioTM 2010 workshop on advances in bio text mining.
BMC Bioinform., 2010

Discriminative and informative features for biomolecular text mining with ensemble feature selection.
Bioinform., 2010

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods.
Bioinform., 2010

Towards an ASR-free objective analysis of pathological speech.
Proceedings of the INTERSPEECH 2010, 2010

2009
Java-ML: A Machine Learning Library.
J. Mach. Learn. Res., 2009

Toward a gold standard for promoter prediction evaluation.
Bioinform., 2009

Valued Constraint Satisfaction Problems Applied to Functional Harmony.
Proceedings of the Joint 2009 International Fuzzy Systems Association World Congress and 2009 European Society of Fuzzy Logic and Technology Conference, 2009

Analyzing text in search of bio-molecular events: a high-precision machine learning framework.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008
Preface.
Proceedings of the Third Workshop on New Challenges for Feature Selection in Data Mining and Knowledge Discovery, 2008

FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.
Bioinform., 2008

A review of estimation of distribution algorithms in bioinformatics.
BioData Min., 2008

Robust Feature Selection Using Ensemble Feature Selection Techniques.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2008

Comparing Distance Measures with Visual Methods.
Proceedings of the MICAI 2008: Advances in Artificial Intelligence, 2008

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007
Validating module network learning algorithms using simulated data.
BMC Bioinform., 2007

In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists.
Bioinform., 2007

A review of feature selection techniques in bioinformatics.
Bioinform., 2007

Predicting Human Immunodeficiency Virus (HIV) Drug Resistance Using Recurrent Neural Networks.
Proceedings of the Bio-inspired Modeling of Cognitive Tasks, 2007

Translation initiation site prediction on a genomic scale: beauty in simplicity.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
Knowledge Discovery and Emergent Complexity in Bioinformatics.
Proceedings of the Knowledge Discovery and Emergent Complexity in Bioinformatics, 2006

Enhancing Coding Potential Prediction for Short Sequences Using Complementary Sequence Features and Feature Selection.
Proceedings of the Knowledge Discovery and Emergent Complexity in Bioinformatics, 2006

Scalable hardware accelerator for comparing DNA and protein sequences.
Proceedings of the 1st International Conference on Scalable Information Systems, 2006

Feature Extraction Using Clustering of Protein.
Proceedings of the Progress in Pattern Recognition, 2006

Feature Ranking Using an EDA-based Wrapper Approach.
Proceedings of the Towards a New Evolutionary Computation, 2006

2005
SpliceMachine: predicting splice sites from high-dimensional local context representations.
Bioinform., 2005

2004
Feature selection for splice site prediction: A new method using EDA-based feature ranking.
BMC Bioinform., 2004

Digging into Acceptor Splice Site Prediction: An Iterative Feature Selection Approach.
Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004

2003
Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003


  Loading...