Marc Baaden

According to our database, Marc Baaden authored at least 35 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A Perspective on the Prospective Use of AI in Protein Structure Prediction.

Raphaelle Versini, Sujith Sritharan, Burcu Aykaç Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüsse, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly

J. Chem. Inf. Model., January, 2024

2023

State of the Art of Molecular Visualization in Immersive Virtual Environments.

David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao

Comput. Graph. Forum, September, 2023

A brief history of visualizing membrane systems in molecular dynamics simulations.

Robin A. Corey, Marc Baaden, Matthieu Chavent

Frontiers Bioinform., May, 2023

2022

Deep inside molecules - digital twins at the nanoscale.

Marc Baaden

Virtual Real. Intell. Hardw., 2022

Design - a new way to look at old molecules.

Davide Spalvieri, Anne-Marine Mauviel, Matthieu Lambert, Nicolas Férey, Sophie Sacquin-Mora, Matthieu Chavent, Marc Baaden

J. Integr. Bioinform., 2022

Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design.

Björn Sommer, Daisuke Inoue, Marc Baaden

J. Integr. Bioinform., 2022

Fast and Interactive Positioning of Proteins within Membranes.

André Lanrezac, Benoist Laurent, Hubert Santuz, Nicolas Férey, Marc Baaden

Algorithms, 2022

2021

Lessons learned from urgent computing in Europe: Tackling the COVID-19 pandemic.

Núria López, Luigi Del Debbio, Marc Baaden, Matej Praprotnik, Laura Grigori, Catarina Simões, Serge Bogaerts, Florian Berberich, Thomas Lippert, Janne Ignatius, Philippe Lavocat, Oriol Pineda, Maria Grazia Giuffreda, Sergi Girona, Dieter Kranzlmüller, Michael M. Resch, Gabriella Scipione, Thomas C. Schulthess

Proc. Natl. Acad. Sci. USA, 2021

2019

QuickSES: A Library for Fast Computation of Solvent Excluded Surfaces.

Xavier Martinez, Michael Krone, Marc Baaden

Proceedings of the 2nd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, 2019

2018

Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).

Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden

NII Shonan Meet. Rep., 2018

Ten simple rules to create a serious game, illustrated with examples from structural biology.

Marc Baaden, Olivier Delalande, Nicolas Férey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly

PLoS Comput. Biol., 2018

Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data.

Mikaël Trellet, Nicolas Férey, Jakub Flotynski, Marc Baaden, Patrick Bourdot

J. Integr. Bioinform., 2018

From Virtual Reality to Immersive Analytics in Bioinformatics.

Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods

J. Integr. Bioinform., 2018

MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis.

Alexandre Maes, Xavier Martinez, Karen Druart, Benoist Laurent, Sean Guégan, Christophe H. Marchand, Stéphane D. Lemaire, Marc Baaden

J. Integr. Bioinform., 2018

2017

10 simple rules to create a serious game, illustrated with examples from structural biology.

Marc Baaden, Olivier Delalande, Nicolas Férey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly

CoRR, 2017

Visualization of Biomolecular Structures: State of the Art Revisited.

Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege

Comput. Graph. Forum, 2017

Molecular Visualization of Computational Biology Data: A Survey of Surveys.

Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander S. Rose, Marc Baaden, Robert S. Laramee, Matthieu Chavent

Proceedings of the 19th Eurographics Conference on Visualization, 2017

2016

Visual Analysis of Biomolecular Cavities: State of the Art.

Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola

Comput. Graph. Forum, 2016

2015

Epock: rapid analysis of protein pocket dynamics.

Benoist Laurent, Matthieu Chavent, Tristan Cragnolini, Anna Caroline E. Dahl, Samuela Pasquali, Philippe Derreumaux, Mark S. P. Sansom, Marc Baaden

Bioinform., 2015

Visualization of Biomolecular Structures: State of the Art.

Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege

Proceedings of the 17th Eurographics Conference on Visualization, 2015

2014

A Cooperative Mechanism of Clotrimazoles in P450 Revealed by the Dissociation Picture of Clotrimazole from P450.

Mian Wang, Marc Baaden, Jianyi Wang, Zhiqun Liang

J. Chem. Inf. Model., 2014

UnityMol: Interactive scientific visualization for integrative biology.

Sebastien Doutreligne, Tristan Cragnolini, Samuela Pasquali, Philippe Derreumaux, Marc Baaden

Proceedings of the 4th IEEE Symposium on Large Data Analysis and Visualization, 2014

Content-guided Navigation in Multimeric Molecular Complexes.

Mikaël Trellet, Nicolas Férey, Marc Baaden, Patrick Bourdot

Proceedings of the BIOIMAGING 2014, 2014

2013

Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations.

Daniel L. Parton, Alex Tek, Marc Baaden, Mark S. P. Sansom

PLoS Comput. Biol., 2013

Interactive Molecular Dynamics: Scaling up to Large Systems.

Matthieu Dreher, Marc Piuzzi, Ahmed Turki, Matthieu Chavent, Marc Baaden, Nicolas Férey, Sébastien Limet, Bruno Raffin, Sophie Robert

Proceedings of the International Conference on Computational Science, 2013

2011

GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids.

Matthieu Chavent, Antoine Vanel, Alex Tek, Bruno Lévy, Sophie Robert, Bruno Raffin, Marc Baaden

J. Comput. Chem., 2011

GPU-powered tools boost molecular visualization.

Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nomine, Thomas Ertl, Marc Baaden

Briefings Bioinform., 2011

2010

How Cations Can Assist DNase I in DNA Binding and Hydrolysis.

Marc Gueroult, Daniel Picot, Joséphine Abi-Ghanem, Brigitte Hartmann, Marc Baaden

PLoS Comput. Biol., 2010

Multi-Resolution Approach for Interactively Locating Functionally Linked Ion Binding Sites by Steering Small Molecules into Electrostatic Potential Maps Using a Haptic Device.

Olivier Delalande, Nicolas Férey, Benoist Laurent, Marc Gueroult, Brigitte Hartmann, Marc Baaden

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Simulations numériques de systèmes biologiques complexes : dynamique, structure et fonction de transporteurs, canaux et enzymes. (Numerical simulations of complex biological systems: dynamics, structure and function of transporters, channels and enzymes).

Marc Baaden

, 2010

2009

Complex molecular assemblies at hand via interactive simulations.

Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden

J. Comput. Chem., 2009

2008

A VR framework for interacting with molecular simulations.

Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden

Proceedings of the ACM Symposium on Virtual Reality Software and Technology, 2008

From Interactive to Immersive Molecular Dynamics.

Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden

Proceedings of the Fifth Workshop on Virtual Reality Interactions and Physical Simulations, 2008

2007

Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex: a Grand Challenge Project on the DEISA HPC Infrastructure.

Elmar Krieger, Laurent Leger, Marie-Pierre Durrieu, Nada Taib, Peter Bond, Michel Laguerre, Richard Lavery, Mark S. P. Sansom, Marc Baaden

Proceedings of the Parallel Computing: Architectures, 2007

2003

Etudes de molécules extractantes en solution et aux interfaces liquide-liquide : aspects structuraux et mécanistiques des effets de synergie.

Marc Baaden

PhD thesis, 2003