Jody Clements

According to our database, Jody Clements authored at least 12 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

NeuronBridge: an intuitive web application for neuronal morphology search across large data sets.

Jody Clements, Cristian Goina, Philip M. Hubbard, Takashi Kawase, Donald J. Olbris, Hideo Otsuna, Robert Svirskas, Konrad Rokicki

BMC Bioinform., December, 2024

2022

neuPrint: An open access tool for EM connectomics.

Stephen M. Plaza, Jody Clements, Tom Dolafi, Lowell A. Umayam, Nicole N. Neubarth, Louis K. Scheffer, Stuart E. Berg

Frontiers Neuroinformatics, 2022

2020

Estimating the power of sequence covariation for detecting conserved RNA structure.

Elena Rivas, Jody Clements, Sean R. Eddy

Bioinform., 2020

2016

The Dfam database of repetitive DNA families.

Robert Hubley, Robert D. Finn, Jody Clements, Sean R. Eddy, Thomas A. Jones, Weidong Bao, Arian F. A. Smit, Travis J. Wheeler

Nucleic Acids Res., 2016

2015

HMMER web server: 2015 update.

Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy

Nucleic Acids Res., 2015

2014

iPfam: a database of protein family and domain interactions found in the Protein Data Bank.

Robert D. Finn, Benjamin L. Miller, Jody Clements, Alex Bateman

Nucleic Acids Res., 2014

Pfam: the protein families database.

Robert D. Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John G. Tate, Marco Punta

Nucleic Acids Res., 2014

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.

Travis J. Wheeler, Jody Clements, Robert D. Finn

BMC Bioinform., 2014

2013

Dfam: a database of repetitive DNA based on profile hidden Markov models.

Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn

Nucleic Acids Res., 2013

2012

The Pfam protein families database.

Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn

Nucleic Acids Res., 2012

2011

HMMER web server: interactive sequence similarity searching.

Robert D. Finn, Jody Clements, Sean R. Eddy

Nucleic Acids Res., 2011

2007

ProServer: a simple, extensible Perl DAS server.

Robert D. Finn, James W. Stalker, David K. Jackson, Eugene Kulesha, Jody Clements, Roger Pettett

Bioinform., 2007