Johannes Söding

According to our database1, Johannes Söding authored at least 30 papers between 2003 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2021
DescribePROT: database of amino acid-level protein structure and function predictions.
Nucleic Acids Res., 2021

2019
HH-suite3 for fast remote homology detection and deep protein annotation.
BMC Bioinform., 2019

PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes.
Bioinform., 2019

MMseqs2 desktop and local web server app for fast, interactive sequence searches.
Bioinform., 2019

2018
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction.
PLoS Comput. Biol., 2018

The BaMM web server for de-novo motif discovery and regulatory sequence analysis.
Nucleic Acids Res., 2018

2017
Uniclust databases of clustered and deeply annotated protein sequences and alignments.
Nucleic Acids Res., 2017

WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs.
Bioinform., 2017

2016
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis.
Nucleic Acids Res., 2016

MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
Bioinform., 2016

2015
Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling.
PLoS Comput. Biol., 2015

Context similarity scoring improves protein sequence alignments in the midnight zone.
Bioinform., 2015

bbcontacts: prediction of <i>β</i>-strand pairing from direct coupling patterns.
Bioinform., 2015

2014
Universality of core promoter elements?
Nat., 2014

CCMpred - fast and precise prediction of protein residue-residue contacts from correlated mutations.
Bioinform., 2014

2013
kClust: fast and sensitive clustering of large protein sequence databases.
BMC Bioinform., 2013

2012
The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences.
Nucleic Acids Res., 2012

Discriminative modelling of context-specific amino acid substitution probabilities.
Bioinform., 2012

2009
HHomp - prediction and classification of outer membrane proteins.
Nucleic Acids Res., 2009

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.
Bioinform., 2009

2008
Prediction of protein functional residues from sequence by probability density estimation.
Bioinform., 2008

<i>De novo</i> identification of highly diverged protein repeats by probabilistic consistency.
Bioinform., 2008

2007
TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences.
BMC Bioinform., 2007

2006
HHsenser: exhaustive transitive profile search using HMM-HMM comparison.
Nucleic Acids Res., 2006

HHrep: <i>de novo</i> protein repeat detection and the origin of TIM barrels.
Nucleic Acids Res., 2006

The MPI Bioinformatics Toolkit for protein sequence analysis.
Nucleic Acids Res., 2006

2005
The HHpred interactive server for protein homology detection and structure prediction.
Nucleic Acids Res., 2005

REPPER - repeats and their periodicities in fibrous proteins.
Nucleic Acids Res., 2005

Protein homology detection by HMM?CHMM comparison.
Bioinform., 2005

2003
0n the Evolution of Proteins from Peptides(Invited Talk).
Proceedings of the German Conference on Bioinformatics, 2003


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