Maria Jesus Martin

Affiliations:
  • European Bioinformatics Institute, Hinxton, UK


According to our database1, Maria Jesus Martin authored at least 50 papers between 1997 and 2023.

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Bibliography

2023
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
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Bioinform., January, 2023

Transfer learning for drug-target interaction prediction.
Bioinform., 2023

2022
The IntAct database: efficient access to fine-grained molecular interaction data.
Nucleic Acids Res., 2022

SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.
Bioinform., 2022

Hierarchical deep learning for predicting GO annotations by integrating protein knowledge.
Bioinform., 2022

A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation, 2022

2021
Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases.
PLoS Comput. Biol., 2021

The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

UniProt: the universal protein knowledgebase in 2021.
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Nucleic Acids Res., 2021

MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.
Bioinform., 2021

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
Bioinform., 2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform., 2021

2020
The Quest for Orthologs benchmark service and consensus calls in 2020.
Nucleic Acids Res., 2020

GlyGen data model and processing workflow.
Bioinform., 2020

2019
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins.
Nucleic Acids Res., 2019

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.
Briefings Bioinform., 2019

2018
ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature.
BMC Bioinform., 2018

2017
The Proteins API: accessing key integrated protein and genome information.
Nucleic Acids Res., 2017

Uniclust databases of clustered and deeply annotated protein sequences and alignments.
Nucleic Acids Res., 2017

Open Targets: a platform for therapeutic target identification and validation.
Nucleic Acids Res., 2017

ProtVista: visualization of protein sequence annotations.
Bioinform., 2017

2016
Using the Gene Ontology to Annotate Key Players in Parkinson's Disease.
Neuroinformatics, 2016

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.
Bioinform., 2016

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.
Database J. Biol. Databases Curation, 2016

Minimizing proteome redundancy in the UniProt Knowledgebase.
Database J. Biol. Databases Curation, 2016

A Graph-based Taxonomy RESTful Data Service.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

2015
The GOA database: Gene Ontology annotation updates for 2015.
Nucleic Acids Res., 2015

UniProt-GOA: A Central Resource for Data Integration and GO Annotation.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014
Big data and other challenges in the quest for orthologs.
Bioinform., 2014

The EBI RDF platform: linked open data for the life sciences.
Bioinform., 2014

2013
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource.
Nucleic Acids Res., 2013

The EBI enzyme portal.
Nucleic Acids Res., 2013

BioJS: an open source JavaScript framework for biological data visualization.
Bioinform., 2013

Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.
Database J. Biol. Databases Curation, 2013

2012
The UniProt-GO Annotation database in 2011.
Nucleic Acids Res., 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012

AntiFam: a tool to help identify spurious ORFs in protein annotation.
Database J. Biol. Databases Curation, 2012

2011
Dasty3, a WEB framework for DAS.
Bioinform., 2011

Annotating UniProt Metagenomic and Environmental Sequences in UniMES.
Proceedings of the BIOINFORMATICS 2011, 2011

2009
Infrastructure for the life sciences: design and implementation of the UniProt website.
BMC Bioinform., 2009

2008
UniProtJAPI: a remote API for accessing UniProt data.
Bioinform., 2008

2006
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res., 2006

2005
The Universal Protein Resource (UniProt).
Nucleic Acids Res., 2005

2004
UniProt: the Universal Protein knowledgebase.
Nucleic Acids Res., 2004

2003
The European Bioinformatics Institute's data resources.
Nucleic Acids Res., 2003

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic Acids Res., 2003

2002
High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL.
Briefings Bioinform., 2002

1999
Removing redundancy in SWISS-PROT and TrEMBL.
Bioinform., 1999

1998
SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world.
Proceedings of the German Conference on Bioinformatics, 1998

1997
Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997


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