Joseph N. Paulson

According to our database, Joseph N. Paulson authored at least 10 papers between 2016 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

mbQTL: an R/Bioconductor package for microbial quantitative trait loci (QTL) estimation.

Mercedeh Movassagh, Steven J. Schiff, Joseph N. Paulson

Bioinform., September, 2023

2022

GameRank: R package for feature selection and construction.

Carsten Henneges, Joseph N. Paulson

Bioinform., October, 2022

2021

Multivariable association discovery in population-scale meta-omics studies.

Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower

PLoS Comput. Biol., 2021

MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities.

Janina Reeder, Mo Huang, Joshua S. Kaminker, Joseph N. Paulson

Bioinform., 2021

2020

A reference map of the human binary protein interactome.

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nat., 2020

2019

<i>microbiomeDASim</i>: Simulating longitudinal differential abundance for microbiome data.

Justin Williams, Héctor Corrada Bravo, Jennifer Tom, Joseph N. Paulson

F1000Research, 2019

metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data.

Nathan D. Olson, Nidhi Shah, Jayaram Kancherla, Justin Wagner, Joseph N. Paulson, Héctor Corrada Bravo

Bioinform., 2019

2017

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data.

Joseph N. Paulson, Cho-Yi Chen, Camila Miranda Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush

BMC Bioinform., 2017

Estimating gene regulatory networks with pandaR.

Daniel Schlauch, Joseph N. Paulson, Albert Young, Kimberly Glass, John Quackenbush

Bioinform., 2017

2016

Privacy-preserving microbiome analysis using secure computation.

Justin Wagner, Joseph N. Paulson, Xiao Wang, Bobby Bhattacharjee, Héctor Corrada Bravo

Bioinform., 2016