Javier De Las Rivas

According to our database1, Javier De Las Rivas authored at least 37 papers between 2004 and 2020.

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Bibliography

2020
A reference map of the human binary protein interactome.
Nat., 2020

2019
DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling.
Bioinform., 2019

APID database: redefining protein-protein interaction experimental evidences and binary interactomes.
Database J. Biol. Databases Curation, 2019

2018
JAMI: a Java library for molecular interactions and data interoperability.
BMC Bioinform., 2018

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
BMC Bioinform., 2018

2017
Ten simple rules for forming a scientific professional society.
PLoS Comput. Biol., 2017

Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures.
Briefings Bioinform., 2017

2016
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.
Nucleic Acids Res., 2016

Identification of expression patterns in the progression of disease stages by integration of transcriptomic data.
BMC Bioinform., 2016

Role of Nerve Growth Factor Signaling in Cancer Cell Proliferation and Survival Using a Reachability Analysis Approach.
Proceedings of the 10th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2016

2015
Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering.
Bioinform., 2015

Analysis of Cellular Proliferation and Survival Signaling by Using Two Ligand/Receptor Systems Modeled by Pathway Logic.
Proceedings of the Hybrid Systems Biology - Fourth International Workshop, 2015

2014
A Logic Computational Framework to Query Dynamics on Complex Biological Pathways.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

Rewriting Logic and Symbolic Systems Biology applied to EGF Signaling Pathway.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

2013
iAnn: an event sharing platform for the life sciences.
Bioinform., 2013

Best practices in bioinformatics training for life scientists.
Briefings Bioinform., 2013

2012
Integrating literature-constrained and data-driven inference of signalling networks.
Bioinform., 2012

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
Briefings Bioinform., 2012

2011
Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Comput. Biol., 2011

2010
Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks.
PLoS Comput. Biol., 2010

GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
BMC Bioinform., 2010

Bioinformatics training: a review of challenges, actions and support requirements.
Briefings Bioinform., 2010

2009
Improving k-NN for Human Cancer Classification Using the Gene Expression Profiles.
Proceedings of the Advances in Intelligent Data Analysis VIII, 2009

Kernel Alignment <i>k</i>-NN for Human Cancer Classification Using the Gene Expression Profiles.
Proceedings of the Artificial Neural Networks, 2009

2008
Ensemble of Support Vector Machines to Improve the Cancer Class Prediction Based on the Gene Expression Profiles.
Proceedings of the Innovations in Hybrid Intelligent Systems, 2008

Combining Dissimilarities in a Hyper Reproducing Kernel Hilbert Space for Complex Human Cancer Prediction.
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

Classification of multiple cancer types in a Hyper Reproducing Kernel Hilbert Space.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007
Combining dissimilarity based classifiers for cancer prediction using gene expression profiles.
BMC Bioinform., 2007

Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases.
BMC Bioinform., 2007

APID2NET: unified interactome graphic analyzer.
Bioinform., 2007

Ensemble of Dissimilarity Based Classifiers for Cancerous Samples Classification.
Proceedings of the Pattern Recognition in Bioinformatics, 2007

On the Combination of Dissimilarities for Gene Expression Data Analysis.
Proceedings of the Artificial Neural Networks, 2007

Ensemble of Kernel Based Classifiers to Improve the Human Cancer Prediction using DNA Microarrays.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
APID: Agile Protein Interaction DataAnalyzer.
Nucleic Acids Res., 2006

Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes.
Bioinform., 2006

2004
Integration and Comparison of Interactome Databases.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004

Investigating the Assignment of Probes to Transcripts in Affymetrix Microarrays.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004


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