Edda Klipp

According to our database, Edda Klipp authored at least 36 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models.

Willow Carretero Chavez, Marcus Krantz, Edda Klipp, Irina Kufareva

BMC Bioinform., December, 2023

2022

Identification of periodic attractors in Boolean networks using a priori information.

Ulrike Münzner, Tomoya Mori, Marcus Krantz, Edda Klipp, Tatsuya Akutsu

PLoS Comput. Biol., 2022

2021

Sperm migration in the genital tract - In silico experiments identify key factors for reproductive success.

Jorin Diemer, Jens Hahn, Björn Goldenbogen, Karin Müller, Edda Klipp

PLoS Comput. Biol., 2021

2020

Moonlighting proteins - an approach to systematize the concept.

Maria Krantz, Edda Klipp

Silico Biol., 2020

Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality.

Stephan O. Adler, Edda Klipp

Entropy, 2020

2019

Information Thermodynamics for Time Series of Signal-Response Models.

Andrea Auconi, Andrea Giansanti, Edda Klipp

Entropy, 2019

2018

Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.

Wolfgang Giese, Gregor Milicic, Andreas Schröder, Edda Klipp

PLoS Comput. Biol., 2018

Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach.

Arturo Blazquez-Navarro, Thomas Schachtner, Ulrik Stervbo, Anett Sefrin, Maik Stein, Timm H. Westhoff, Petra Reinke, Edda Klipp, Nina Babel, Avidan U. Neumann, Michal Or-Guil

PLoS Comput. Biol., 2018

2016

Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency.

Max Schelker, Caroline Maria Mair, Fabian Jolmes, Robert-William Welke, Edda Klipp, Andreas Herrmann, Max Flöttmann, Christian Sieben

PLoS Comput. Biol., 2016

A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast <i>Saccharomyces cerevisiae</i>.

Susanne Gerber, Martina Fröhlich, Hella Lichtenberg-Fraté, Sergey Shabala, Lana Shabala, Edda Klipp

PLoS Comput. Biol., 2016

Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks.

Josch Pauling, Edda Klipp

J. Integr. Bioinform., 2016

The game theory of <i>Candida albicans</i> colonization dynamics reveals host status-responsive gene expression.

Katarzyna M. Tyc, Sanna E. Herwald, Jennifer A. Hogan, Jessica V. Pierce, Edda Klipp, Carol A. Kumamoto

BMC Syst. Biol., 2016

SBtab: a flexible table format for data exchange in systems biology.

Timo Lubitz, Jens Hahn, Frank T. Bergmann, Elad Noor, Edda Klipp, Wolfram Liebermeister

Bioinform., 2016

2015

Bud-Localization of <i>CLB2</i> mRNA Can Constitute a Growth Rate Dependent Daughter Sizer.

Thomas W. Spiesser, Clemens Kühn, Marcus Krantz, Edda Klipp

PLoS Comput. Biol., 2015

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.

Tomoya Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp

BMC Syst. Biol., 2015

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems.

Andreas Raue, Bernhard Steiert, Max Schelker, Clemens Kreutz, Tim Maiwald, Helge Hass, Joep Vanlier, Christian Tönsing, Lorenz Adlung, Raphael Engesser, Wolfgang Mader, Tim Heinemann, Jan Hasenauer, Marcel Schilling, Thomas Höfer, Edda Klipp, Fabian J. Theis, Ursula Klingmüller, Birgit Schoeberl, Jens Timmer

Bioinform., 2015

2014

Yeast Mating and Image-Based Quantification of Spatial Pattern Formation.

Christian Diener, Gabriele Schreiber, Wolfgang Giese, Gabriel del Rio, Andreas Schröder, Edda Klipp

PLoS Comput. Biol., 2014

Global dynamic optimization approach to predict activation in metabolic pathways.

Gundián M. de Hijas-Liste, Edda Klipp, Eva Balsa-Canto, Julio R. Banga

BMC Syst. Biol., 2014

SensA: web-based sensitivity analysis of SBML models.

Max Flöttmann, Jannis Uhlendorf, Till Scharp, Edda Klipp, Thomas W. Spiesser

Bioinform., 2014

BooleSim: an interactive Boolean network simulator.

Matthias Bock, Till Scharp, Chaitanya Talnikar, Edda Klipp

Bioinform., 2014

2013

Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress.

Elzbieta Petelenz-Kurdziel, Clemens Kühn, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber, Jens Nielsen, Stefan Hohmann, Edda Klipp

PLoS Comput. Biol., 2013

Reaction-contingency based bipartite Boolean modelling.

Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz

BMC Syst. Biol., 2013

Biographer: web-based editing and rendering of SBGN compliant biochemical networks.

Falko Krause, Marvin Schulz, Ben Ripkens, Max Flöttmann, Marcus Krantz, Edda Klipp, Thomas Handorf

Bioinform., 2013

2012

Propagating semantic information in biochemical network models.

Marvin Schulz, Edda Klipp, Wolfram Liebermeister

BMC Bioinform., 2012

Modeling mechanistic biological networks: An advanced Boolean approach.

Thomas Handorf, Edda Klipp

Bioinform., 2012

2011

Minimum Information About a Simulation Experiment (MIASE).

Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère

PLoS Comput. Biol., 2011

STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.

Szymon Stoma, Martina Fröhlich, Susanne Gerber, Edda Klipp

BMC Bioinform., 2011

2010

Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation.

Wolfram Liebermeister, Jannis Uhlendorf, Edda Klipp

Bioinform., 2010

Annotation and merging of SBML models with semanticSBML.

Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister

Bioinform., 2010

2009

Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network.

Clemens Kühn, Christoph K. Wierling, Alexander Kühn, Edda Klipp, Georgia Panopoulou, Hans Lehrach, Albert J. Poustka

BMC Syst. Biol., 2009

TIde: a software for the systematic scanning of drug targets in kinetic network models.

Marvin Schulz, Barbara M. Bakker, Edda Klipp

BMC Bioinform., 2009

Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.

Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina

BMC Bioinform., 2009

Systems Biology - a Textbook.

Edda Klipp, Wolfram Liebermeister, Christoph K. Wierling, Axel Kowald, Hans Lehrach

Wiley, ISBN: 978-3-527-31874-2, 2009

2008

SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.

Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp

BMC Bioinform., 2008

2007

Cell Size at S Phase Initiation: An Emergent Property of the G₁/S Network.

Matteo Barberis, Edda Klipp, Marco Vanoni, Lilia Alberghina

PLoS Comput. Biol., 2007

2006

SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.

Zhike Zi, Edda Klipp

Bioinform., 2006