Toshihisa Takagi

According to our database1, Toshihisa Takagi authored at least 95 papers between 1984 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 




Interconnection of Biological Knowledge Using NikkajiRDF and Interlinking Ontology for Biological Concepts.
New Gener. Comput., 2019

TogoGenome/TogoStanza: modularized Semantic Web genome database.
Database J. Biol. Databases Curation, 2019

Building Knowledge Graph Across Different Subdomains Using Interlinking Ontology for Biomedical Concepts.
Proceedings of the Semantic Technology - 9th Joint International Conference, 2019

DNA Data Bank of Japan: 30th anniversary.
Nucleic Acids Res., 2018

The international nucleotide sequence database collaboration.
Nucleic Acids Res., 2018

NBDC RDF portal: a comprehensive repository for semantic data in life sciences.
Database J. Biol. Databases Curation, 2018

Inference of Functions, Roles, and Applications of Chemicals Using Linked Open Data and Ontologies.
Proceedings of the Semantic Technology - 8th Joint International Conference, 2018

A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems.
Proceedings of the Semantic Technology - 8th Joint International Conference, 2018

DNA Data Bank of Japan.
Nucleic Acids Res., 2017

Refined JST Thesaurus Extended with Data from Other Open Life Science Data Sources.
Proceedings of the Semantic Technology - 7th Joint International Conference, 2017

Efficient Construction of a New Ontology for Life Sciences by Sub-classifying Related Terms in the Japan Science, Technology Agency Thesaurus.
Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

DNA data bank of Japan (DDBJ) progress report.
Nucleic Acids Res., 2016

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.
Nucleic Acids Res., 2015

DDBJ progress report: a new submission system for leading to a correct annotation.
Nucleic Acids Res., 2014

DDBJ new system and service refactoring.
Nucleic Acids Res., 2013

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.
Nucleic Acids Res., 2012

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.
BMC Bioinform., 2012

Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV.
Briefings Bioinform., 2012

DDBJ progress report.
Nucleic Acids Res., 2011

Bio-molecular Event Extraction with Markov Logic.
Comput. Intell., 2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomed. Semant., 2011

Interactive, multiscale navigation of large and complicated biological networks.
Bioinform., 2011

Allie: a database and a search service of abbreviations and long forms.
Database J. Biol. Databases Curation, 2011

INOH: ontology-based highly structured database of signal transduction pathways.
Database J. Biol. Databases Curation, 2011

Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

Overview of Genia Event Task in BioNLP Shared Task 2011.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services.
Nucleic Acids Res., 2010

DDBJ launches a new archive database with analytical tools for next-generation sequence data.
Nucleic Acids Res., 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant., 2010

Ligand-binding site prediction of proteins based on known fragment-fragment interactions.
Bioinform., 2010

Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways.
Artif. Intell. Medicine, 2010

Multiscale Service Design Method and Its Application to Sustainable Service for Prevention and Recovery from Dementia.
Proceedings of the New Frontiers in Artificial Intelligence, 2010

Authoring Computer-Understandable Semantic Summaries of Life Science Articles Optimized for Knowledge Mining.
Proceedings of the Advances in Data Mining. 10th Industrial Conference, 2010

Bridging the Knowledge Gap between Research and Education through Textbooks.
Proceedings of the Advances in Web-Based Learning - ICWL 2010, 2010

Generating Literature-based Knowledge Discoveries in Life Sciences using Relationship Associations.
Proceedings of the KDIR 2010, 2010

Literature-Based Knowledge Discovery from Relationship Associations Based on a DL Ontology Created from MeSH.
Proceedings of the Knowledge Discovery, Knowledge Engineering and Knowledge Management, 2010

Natural Language Query Processing for Life Science Knowledge - Position Paper.
Proceedings of the Active Media Technology, 6th International Conference, 2010

Gendoo: Functional profiling of gene and disease features using MeSH vocabulary.
Nucleic Acids Res., 2009

BodyParts3D: 3D structure database for anatomical concepts.
Nucleic Acids Res., 2009

Development of coimagination method towards cognitive enhancement via image based interactive communication.
Proceedings of the 18th IEEE International Symposium on Robot and Human Interactive Communication, 2009

GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines.
Proceedings of the 23rd Pacific Asia Conference on Language, Information and Computation, 2009

Coimagination Method: Communication Support System with Collected Images and Its Evaluation via Memory Task.
Proceedings of the Universal Access in Human-Computer Interaction. Addressing Diversity, 2009

Collection of Disease Networks by Hybrid Curation Method and the Application for Pathway Analysis.
Proceedings of the 2009 International Conference on Complex, 2009

Classifying Biomedical Figures Using Combination of Bag of Keypoints and Bag of Words.
Proceedings of the 2009 International Conference on Complex, 2009

A Markov Logic Approach to Bio-Molecular Event Extraction.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

Open brain simulator estimating internal state of human through external observation towards human biomechatronics.
Proceedings of the 2008 IEEE International Conference on Robotics and Automation, 2008

On-line discovery of temporal-difference networks.
Proceedings of the Machine Learning, 2008

Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

Figure Classification in Biomedical Literature towards Figure Mining.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Experimental Analysis of the Attribution of Own Actions to the Intention of Self or Others by the Multiple Forward Models.
J. Robotics Mechatronics, 2007

Biomedical knowledge navigation by literature clustering.
J. Biomed. Informatics, 2007

Knowledge discovery based on an implicit and explicit conceptual network.
J. Assoc. Inf. Sci. Technol., 2007

OReFiL: an online resource finder for life sciences.
BMC Bioinform., 2007

Experimental analysis and computational simulation of the attribution of own actions by the multiple forward models.
Proceedings of the IEEE International Conference on Robotics and Biomimetics, 2007

Reconstruction of highly heterogeneous gene-content evolution across the three domains of life.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

Improving the Performance of an SVM-Based Method for Predicting Protein-Protein Interactions.
Silico Biol., 2006

Event Ontology: A Pathway-Centric Ontology for Biological Processes.
Proceedings of the Biocomputing 2006, 2006

Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues.
Nucleic Acids Res., 2005

Research Paper: ALICE: An Algorithm to Extract Abbreviations from MEDLINE.
J. Am. Medical Informatics Assoc., 2005

Automatic extraction of gene/protein biological functions from biomedical text.
Bioinform., 2005

A Sentence Classification System for Multi Biomedical Literature Summarization.
Proceedings of the 21st International Conference on Data Engineering Workshops, 2005

Preface - Third "Ontology Workshop on Ontology and Genomes".
Silico Biol., 2004

Large-scale collection and characterization of promoters of human and mouse genes.
Silico Biol., 2004

PRIME: automatically extracted PRotein Interactions and Molecular Information databas.
Silico Biol., 2004

Predicting rules on organization of cis-regulatory elements, taking the order of elements into account.
Bioinform., 2004

A Practical Partial Parser for Biomedical Literature Summarization.
Proceedings of the Natural Language Understanding and Cognitive Science, 2004

Prediction of Protein-Protein Interactions Using Support Vector Machines.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

A Pathway Editor for Literature-based Knowledge Curation.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

Preface: The Second Workshop on Ontology and Genome.
Silico Biol., 2003

FREX: A query interface for biological processes with hierarchical and recursive structures.
Silico Biol., 2003

MELINA: motif extraction from promoter regions of potentially co-regulated genes.
Bioinform., 2003

A Method to Retrieve Papers from MEDLINE: PETER System.
Proceedings of The Twelfth Text REtrieval Conference, 2003

DIGIT: A Novel Gene Finding Program by Combining Gene-Finders.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

JSNP: a database of common gene variations in the Japanese population.
Nucleic Acids Res., 2002

Automated extraction of information on protein-protein interactions from the biological literature.
Bioinform., 2001

Knowledge representation of signal transduction pathways.
Bioinform., 2001

Ontology and functional genomics.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary.
Bioinform., 2000

Estimating transcription factor bindability on DNA.
Bioinform., 1999

Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences.
Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

Application of a deductive database system to search for topological and similar three-dimensional structures in protein.
Comput. Appl. Biosci., 1997

Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Automatic Construction of Knowledge Base from Biological Papers.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Development of an integrated Database for Genome Mapping and Nucleotide Sequences.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

A Deductive Object-Oriented Language for Integrated Genome Databaser.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

A deductive database system PACADE for analyzing 3-D and secondary structures of protein.
Comput. Appl. Biosci., 1993

Development of the Overlapping Oligonucleotide Database and its application to signal sequence search of the human genome.
Comput. Appl. Biosci., 1993

Object-Oriented Database with Rule-Based Query Interface for Genomic Computation.
Proceedings of the 3rd International Conference on Database Systems for Advanced Applications (DASFAA), 1993

Evaluation of a deductive database system for CAD applications.
Systems and Computers in Japan, 1992

Bidirectional inference of mode information for logic programs.
Systems and Computers in Japan, 1991

A Matching Tree Oriented Abstract Machine for Prolog.
Proceedings of the Logic Programming, 1990

Implementation of Inferential Relational Database System.
Proceedings of the Foundations of Data Organization, 1985

GENAS: a database system for nucleic acid sequence analysis.
Nucleic Acids Res., 1984