Kristof Engelen

According to our database, Kristof Engelen authored at least 20 papers between 2003 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_.

Marco Moretto, Paolo Sonego, Ana B. Villaseñor-Altamirano, Kristof Engelen

BMC Bioinform., December, 2019

2018

NES²RA.

Francesco Asnicar, Luca Masera, Emanuela Coller, Caterina Gallo, Nadir Sella, Thomas Tolio, Paolo Morettin, Luca Erculiani, Francesca Galante, Stanislau Semeniuta, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri

Int. J. High Perform. Comput. Appl., 2018

2016

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.

Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen

Nucleic Acids Res., 2016

2015

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome.

Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Alessia Bani, Manuela Chiancianesi, Marco Moretto, Kristof Engelen, Giovanni Bacci, Francesco Pini, Emanuele G. Biondi, Marco Bazzicalupo, Alessio Mengoni

PLoS Comput. Biol., 2015

Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing.

Francesco Asnicar, Luca Erculiani, Francesca Galante, Caterina Gallo, Luca Masera, Paolo Morettin, Nadir Sella, Stanislau Semeniuta, Thomas Tolio, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri

Proceedings of the 2015 IEEE TrustCom/BigDataSE/ISPA, 2015

2014

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.

Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides, Kristof Engelen

Nucleic Acids Res., 2014

MAGIC: access portal to a cross-platform gene expression compendium for maize.

Qiang Fu, Ana Carolina Fierro, Pieter Meysman, Aminael Sánchez-Rodríguez, Klaas Vandepoele, Kathleen Marchal, Kristof Engelen

Bioinform., 2014

2013

Identifying differentially expressed genes in the absence of replication.

Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal, Dan Lin

Int. J. Bioinform. Res. Appl., 2013

2011

Use of structural DNA properties for the prediction of transcription-factor binding sites in <i>Escherichia coli</i>.

Pieter Meysman, Thanh Hai Dang, Kris Laukens, Riet De Smet, Yan Wu, Kathleen Marchal, Kristof Engelen

Nucleic Acids Res., 2011

Query-based biclustering of gene expression data using Probabilistic Relational Models.

Hui Zhao, Lore Cloots, Tim Van den Bulcke, Yan Wu, Riet De Smet, Valerie Storms, Pieter Meysman, Kristof Engelen, Kathleen Marchal

BMC Bioinform., 2011

2009

ViTraM: visualization of transcriptional modules.

Hong Sun, Karen Lemmens, Tim Van den Bulcke, Kristof Engelen, Bart De Moor, Kathleen Marchal

Bioinform., 2009

Layout and Post-Processing of Transcriptional Modules.

Hong Sun, Tim Van den Bulcke, Bart De Moor, Karen Lemmens, Kristof Engelen, Kathleen Marchal

Proceedings of the International Joint Conferences on Bioinformatics, 2009

The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present.

Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008

Evaluation of time profile reconstruction from complex two-color microarray designs.

Ana Carolina Fierro, Raphael Thuret, Kristof Engelen, Gilles Bernot, Kathleen Marchal, Nicolas Pollet

BMC Bioinform., 2008

2007

Joint mapping of genes and conditions via multidimensional unfolding analysis.

Katrijn Van Deun, Kathleen Marchal, Willem J. Heiser, Kristof Engelen, Iven Van Mechelen

BMC Bioinform., 2007

CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.

Hui Zhao, Kristof Engelen, Bart De Moor, Kathleen Marchal

Bioinform., 2007

2006

A calibration method for estimating absolute expression levels from microarray data.

Kristof Engelen, Bart Naudts, Bart De Moor, Kathleen Marchal

Bioinform., 2006

2005

Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data.

Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal

Proceedings of the Biocomputing 2005, 2005

2003

INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis.

Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor

Nucleic Acids Res., 2003

MARAN: Normalizing Micro-array Data.

Kristof Engelen, Bert Coessens, Kathleen Marchal, Bart De Moor

Bioinform., 2003