Kris Laukens

According to our database, Kris Laukens authored at least 28 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The pitfalls of negative data bias for the T-cell epitope specificity challenge.

Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman

Nat. Mac. Intell., October, 2023

2022

A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis.

Lennert Verboven, Toon Calders, Steven Callens, John Black, Gary Maartens, Kelly E. Dooley, Samantha Potgieter, Robin M. Warren, Kris Laukens, Annelies Van Rie

BMC Medical Informatics Decis. Mak., 2022

MoMAC: Multi-objective optimization to combine multiple association rules into an interpretable classification.

Danh Bui Thi, Pieter Meysman, Kris Laukens

Appl. Intell., 2022

2021

ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity.

Sebastiaan Valkiers, Marc van Houcke, Kris Laukens, Pieter Meysman

Bioinform., 2021

Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.

Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman

Briefings Bioinform., 2021

2020

MILES: a Java tool to extract node-specific enriched subgraphs in biomolecular networks.

Pieter Moris, Danh Bui Thi, Kris Laukens, Pieter Meysman

Bioinform., 2020

Clustering association rules to build beliefs and discover unexpected patterns.

Danh Bui Thi, Pieter Meysman, Kris Laukens

Appl. Intell., 2020

2019

Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.

Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

On the viability of unsupervised T-cell receptor sequence clustering for epitope preference.

Pieter Meysman, Nicolas De Neuter, Sofie Gielis, Danh Bui Thi, Benson Ogunjimi, Kris Laukens

Bioinform., 2019

2018

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.

Charlie Beirnaert, Pieter Meysman, Trung-Nghia Vu, Nina Hermans, Sandra Apers, Luc Pieters, Adrian Covaci, Kris Laukens

PLoS Comput. Biol., 2018

pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion.

Ajay Anand Kumar, Lut Van Laer, Maaike Alaerts, Amin Ardeshirdavani, Yves Moreau, Kris Laukens, Bart Loeys, Geert Vandeweyer

Bioinform., 2018

Grasping frequent subgraph mining for bioinformatics applications.

Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens

BioData Min., 2018

2017

sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.

Kevin Titeca, Pieter Meysman, Kris Laukens, Lennart Martens, Jan Tavernier, Sven Eyckerman

Bioinform., 2017

2016

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.

Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic

BMC Bioinform., February, 2016

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.

Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen

Nucleic Acids Res., 2016

2015

Mining the human proteome for conserved mechanisms.

Stefan Naulaerts, Pieter Meysman, Wim Vanden Berghe, Kris Laukens

BMC Bioinform., 2015

Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns.

Pieter Meysman, Cheng Zhou, Boris Cule, Bart Goethals, Kris Laukens

BioData Min., 2015

A primer to frequent itemset mining for bioinformatics.

Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens

Briefings Bioinform., 2015

Mining Association Rules in Graphs Based on Frequent Cohesive Itemsets.

Tayena Hendrickx, Boris Cule, Pieter Meysman, Stefan Naulaerts, Kris Laukens, Bart Goethals

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2015

2014

Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures.

Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.

Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides, Kristof Engelen

Nucleic Acids Res., 2014

2013

Mining spatially cohesive itemsets in protein molecular structures.

Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals

Proceedings of the 12th International Workshop on Data Mining in Bioinformatics, 2013

2012

AcoSeeD: An Ant Colony Optimization for Finding Optimal Spaced Seeds in Biological Sequence Search.

Dong Do Duc, Huy Q. Dinh, Thanh Hai Dang, Kris Laukens, Huan Hoang Xuan

Proceedings of the Swarm Intelligence - 8th International Conference, 2012

2011

Use of structural DNA properties for the prediction of transcription-factor binding sites in <i>Escherichia coli</i>.

Pieter Meysman, Thanh Hai Dang, Kris Laukens, Riet De Smet, Yan Wu, Kathleen Marchal, Kristof Engelen

Nucleic Acids Res., 2011

An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data.

Trung-Nghia Vu, Dirk Valkenborg, Koen Smets, Kim A. Verwaest, Roger Dommisse, Filip Lemière, Alain Verschoren, Bart Goethals, Kris Laukens

BMC Bioinform., 2011

2010

Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.

Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geert De Jaeger, Martin Kuiper, Erwin Witters, Alain Verschoren, Koenraad Van Leemput

BMC Bioinform., 2010

2008

Prediction of kinase-specific phosphorylation sites using conditional random fields.

Thanh Hai Dang, Koenraad Van Leemput, Alain Verschoren, Kris Laukens

Bioinform., 2008

2006

Integration of gel-based proteome data with pProRep.

Kris Laukens, Rune Matthiesen, Filip Lemière, Eddy Esmans, Harry Van Onckelen, Ole Nørregaard Jensen, Erwin Witters

Bioinform., 2006