Yue Joseph Wang
Orcid: 0000-0002-1788-1102Affiliations:
- Virginia Tech, Department of Electrical and Computer Engineering, Arlington, VA, USA
According to our database1,
Yue Joseph Wang
authored at least 173 papers
between 1994 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on orcid.org
-
on ece.vt.edu
On csauthors.net:
Bibliography
2024
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.
Bioinform., March, 2024
2022
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
Bioinform., 2022
2021
2020
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection.
Bioinform., 2020
Bioinform., 2020
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues.
Bioinform., 2020
2019
BMC Bioinform., 2019
Segmenting Neuronal Structure in 3D Optical Microscope Images via Knowledge Distillation with Teacher-Student Network.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019
2018
Detection of Sources in Non-Negative Blind Source Separation by Minimum Description Length Criterion.
IEEE Trans. Neural Networks Learn. Syst., 2018
IEEE Trans. Medical Imaging, 2018
Maximum Volume Inscribed Ellipsoid: A New Simplex-Structured Matrix Factorization Framework via Facet Enumeration and Convex Optimization.
SIAM J. Imaging Sci., 2018
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
Detection and tracking of migrating oligodendrocyte progenitor cells from in vivo fluorescence time-lapse imaging data.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
2017
Medical Image Anal., 2017
Optimizing the cervix cytological examination based on deep learning and dynamic shape modeling.
Neurocomputing, 2017
Automatic segmentation of overlapping cervical smear cells based on local distinctive features and guided shape deformation.
Neurocomputing, 2017
Automated Functional Analysis of Astrocytes from Chronic Time-Lapse Calcium Imaging Data.
Frontiers Neuroinformatics, 2017
2016
Convex-Optimization-Based Compartmental Pharmacokinetic Analysis for Prostate Tumor Characterization Using DCE-MRI.
IEEE Trans. Biomed. Eng., 2016
Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.
Comput. Biol. Medicine, 2016
Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors.
BMC Bioinform., 2016
Proceedings of the Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, 2016
FASP: A machine learning approach to functional astrocyte phenotyping from time-lapse calcium imaging data.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
Automatic nuclei and cytoplasm segmentation of leukocytes with color and texture-based image enhancement.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
2015
IEEE Trans. Medical Imaging, 2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Locality-constrained Subcluster Representation Ensemble for lung image classification.
Medical Image Anal., 2015
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
Bioinform., 2015
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform., 2015
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015
Learning Shape-Driven Segmentation Based on Neural Network and Sparse Reconstruction Toward Automated Cell Analysis of Cervical Smears.
Proceedings of the Neural Information Processing - 22nd International Conference, 2015
2014
IEEE ACM Trans. Comput. Biol. Bioinform., 2014
A feasible roadmap for developing volumetric probability atlas of localized prostate cancer.
CoRR, 2014
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol., 2014
AISAIC: a software suite for accurate identification of significant aberrations in cancers.
Bioinform., 2014
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform., 2014
Ensemble random projection for multi-label classification with application to protein subcellular localization.
Proceedings of the IEEE International Conference on Acoustics, 2014
A feasible roadmap to identifying significant intercellular genomic heterogeneity in deep sequencing data.
Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014
Predicting age at loss of ambulation in Duchenne muscular dystrophy with deep phenotypic measures.
Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014
A statistical approach to identifying significant transgenerational methylation changes.
Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014
Enhancing the convex analysis of mixtures technique for estimating DCE-MRI pharmacokinetic parameters.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
2013
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
J. Mach. Learn. Res., 2013
Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling.
BMC Bioinform., 2013
Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards.
Bioinform., 2013
An ensemble classifier with random projection for predicting multi-label protein subcellular localization.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
IEEE Trans. Neural Networks Learn. Syst., 2012
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process., 2012
Computational analysis of muscular dystrophy sub-types using a novel integrative scheme.
Neurocomputing, 2012
Proceedings of the Web-Age Information Management, 2012
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2012
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012
Object localization in medical images based on graphical model with contrast and interest-region terms.
Proceedings of the 2012 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
2011
Tissue-Specific Compartmental Analysis for Dynamic Contrast-Enhanced MR Imaging of Complex Tumors.
IEEE Trans. Medical Imaging, 2011
Omni-tomography/Multi-tomography -- Integrating Multiple Modalities for Simultaneous Imaging
CoRR, 2011
BMC Syst. Biol., 2011
Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform., 2011
Bioinform., 2011
BACOM: <i>in silico</i> detection of genomic deletion types and correction of normal cell contamination in copy number data.
Bioinform., 2011
PUGSVM: a caBIG<sup>TM</sup> analytical tool for multiclass gene selection and predictive classification.
Bioinform., 2011
CAM-CM: a signal deconvolution tool for <i>in vivo</i> dynamic contrast-enhanced imaging of complex tissues.
Bioinform., 2011
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Knowledge-guided differential dependency network learning for detecting structural changes in biological networks.
Proceedings of the ACM International Conference on Bioinformatics, 2011
2010
Nonnegative Least-Correlated Component Analysis for Separation of Dependent Sources by Volume Maximization.
IEEE Trans. Pattern Anal. Mach. Intell., 2010
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res., 2010
Int. J. Funct. Informatics Pers. Medicine, 2010
BMC Bioinform., 2010
Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform., 2010
Proceedings of the UAI 2010, 2010
Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
Convex analysis for non-negative blind source separation with application in imaging.
Proceedings of the Convex Optimization in Signal Processing and Communications., 2010
2009
Int. J. Data Min. Bioinform., 2009
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des., 2009
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinform., 2009
An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions.
Bioinform., 2009
A Graph-Based Approach for Clustering Analysis of Gene Expression Data by Using Topological Features.
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009
Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009
2008
IEEE Trans. Signal Process., 2008
Extensions of transductive learning for distributed ensemble classification and application to biometric authentication.
Neurocomputing, 2008
caBIG<sup>TM</sup> VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
BMC Bioinform., 2008
BMC Bioinform., 2008
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform., 2008
Proceedings of the Medical Imaging 2008: Image Processing, 2008
Proceedings of the Bioinformatics Research and Applications, 2008
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
Proceedings of the Bioinformatics Research and Applications, 2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Imaging biomarker analysis of rat mammary fat pads and glandular tissues in MRI images.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008
3-D Deformation Guided On-Line Modification of Multi-leaf Collimators for Adaptive Radiation Therapy.
Proceedings of the Image Analysis and Recognition, 5th International Conference, 2008
Blind separation of non-negative sources by convex analysis: Effective method using linear programming.
Proceedings of the IEEE International Conference on Acoustics, 2008
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
Proceedings of the International Conference on Bioinformatics, 2008
2007
Int. J. Biomed. Imaging, 2007
EURASIP J. Bioinform. Syst. Biol., 2007
VISDA: an open-source caBIG<sup>TM</sup> analytical tool for data clustering and beyond.
Bioinform., 2007
Proceedings of the IAPR Conference on Machine Vision Applications (IAPR MVA 2007), 2007
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007
Proceedings of the IEEE International Conference on Acoustics, 2007
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007
Rat Mammary Fat Pad Segmentation and Growth Rate Evaluation in T1 Weighted MR Images.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
Int. J. Biomed. Imaging, 2006
Int. J. Biomed. Imaging, 2006
EURASIP J. Adv. Signal Process., 2006
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinform., 2006
Blind Separation of Multichannel Biomedical Image Patterns by Non-negative Least-Correlated Component Analysis.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006
Proceedings of the Advances in Neural Networks - ISNN 2006, Third International Symposium on Neural Networks, Chengdu, China, May 28, 2006
Transmission ultrasound computed tomography using a PE-CMOS sensor array: a preliminary animal study.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
ModVis: An information visualization tool for gene module discovery.
Proceedings of the ISCA 19th International Conference on Computer Applications in Industry and Engineering, 2006
2005
Discontinuity-embedded deformable models for surface reconstruction from range images.
IEEE Signal Process. Lett., 2005
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005
Proceedings of the Advances in Bioinformatics and Its Applications, 2005
2004
Sci. China Ser. F Inf. Sci., 2004
Sci. China Ser. F Inf. Sci., 2004
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Simultaneous Estimation of Kinetic Parameters and the Input Function from DCE-MRI Data: Theory and Simulation.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling.
Proceedings of the 17th International Conference on Pattern Recognition, 2004
Proceedings of the 2004 International Conference on Image Processing, 2004
A discontinuity-embedded deformable model for surface modeling.
Proceedings of the Second IASTED International Conference on Circuits, 2004
2003
J. VLSI Signal Process., 2003
Partially-independent component analysis for tissue heterogeneity correction in microarray gene expression analysis.
Proceedings of the NNSP 2003, 2003
Proceedings of the NNSP 2003, 2003
Proceedings of the Medical Imaging 2003: Image Processing, 2003
Proceedings of the Medical Imaging 2003: Image Processing, 2003
Computational intelligence approach for gene expression data mining and classification.
Proceedings of the 2003 IEEE International Conference on Multimedia and Expo, 2003
2002
A Multiple Circular Paths Convolution Neural Network System for Detection of Mammographic Masses.
IEEE Trans. Medical Imaging, 2002
IEEE Trans. Inf. Technol. Biomed., 2002
Enhanced lung cancer detection in temporal subtraction chest radiography using directional edge filtering techniques.
Proceedings of the Medical Imaging 2002: Image Processing, 2002
Proceedings of the Medical Imaging 2002: Image Processing, 2002
Proceedings of the Medical Imaging 2002: Image Processing, 2002
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
2001
Computerized Radiographic Mass Detection - Part II: Decision Support by Featured Database Visualization and Modular Neural Networks.
IEEE Trans. Medical Imaging, 2001
Computerized Radiographic Mass Detection - Part I: Lesion Site Selection by Morphological Enhancement and Contextual Segmentation.
IEEE Trans. Medical Imaging, 2001
Magnetic resonance image analysis by information theoretic criteria and stochastic site models.
IEEE Trans. Inf. Technol. Biomed., 2001
Mixture of Principal Axes Registration for Change Analysis in Computer-Aided Diagnosis.
Proceedings of the 30th Applied Image Pattern Recognition Workshop (AIPR 2001), 2001
2000
Probabilistic principal component subspaces: a hierarchical finite mixture model for data visualization.
IEEE Trans. Neural Networks Learn. Syst., 2000
Proceedings of the Medical Imaging 2000: Image Processing, 2000
Computer-based decision support system: visual mapping of featured database in computer-aided diagnosis.
Proceedings of the Medical Imaging 2000: Image Processing, 2000
Model Supported Image Registration and Warping for Change Detection in Computer-aided Diagnosis.
Proceedings of the 29th Applied Image Pattern Recognition Workshop (AIPR 2000), 2000
1999
Proceedings of the International Joint Conference Neural Networks, 1999
Proceedings of the 1999 IEEE International Conference on Robotics and Automation, 1999
1998
Quantitative Analysis of MR Brain Image Sequences by Adaptive Self-Organizing Finite Mixtures.
J. VLSI Signal Process., 1998
IEEE Trans. Signal Process., 1998
Quantification and segmentation of brain tissues from MR images: a probabilistic neural network approach.
IEEE Trans. Image Process., 1998
A blockwise relaxation labeling scheme and its application to edge detection in cardiac MR image sequences.
Int. J. Imaging Syst. Technol., 1998
Detection of mammographic masses using sector features with a multiple-circular-path neural network.
Proceedings of the Medical Imaging 1998: Image Processing, 1998
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998
1997
Proceedings of the Medical Imaging 1997: Image Display, 1997
Proceedings of the Medical Imaging 1997: Image Display, 1997
Dyadic decomposition: a unified perspective on predictive, subband, and wavelet transforms.
Proceedings of the Medical Imaging 1997: Image Display, 1997
Proceedings of the Medical Imaging 1997: Image Display, 1997
Proceedings of the 1997 IEEE International Conference on Robotics and Automation, 1997
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997
Stochastic Model and Probabilistic Decision-Based Calssifier for Mass Detection in Digital Mammography.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997
1996
Proceedings of the 1996 IEEE International Conference on Acoustics, 1996
Image quality evaluation for radiation dose optimization in CR by shape and wavelet analyses.
Proceedings of the 8th European Signal Processing Conference, 1996
1995
Segmentation of magnetic resonance brain image: integrating region growing and edge detection.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995
1994
Proceedings of the Proceedings 1994 International Conference on Image Processing, 1994