Yue Joseph Wang

According to our database1, Yue Joseph Wang authored at least 141 papers between 1994 and 2018.

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Bibliography

2018
Multi-Pass Fast Watershed for Accurate Segmentation of Overlapping Cervical Cells.
IEEE Trans. Medical Imaging, 2018

Nuclei instance segmentation with dual contour-enhanced adversarial network.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Detection and tracking of migrating oligodendrocyte progenitor cells from in vivo fluorescence time-lapse imaging data.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
Dual discriminative local coding for tissue aging analysis.
Medical Image Anal., 2017

Optimizing the cervix cytological examination based on deep learning and dynamic shape modeling.
Neurocomputing, 2017

Automatic segmentation of overlapping cervical smear cells based on local distinctive features and guided shape deformation.
Neurocomputing, 2017

2016
Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.
Comput. Biol. Medicine, 2016

Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors.
BMC Bioinform., 2016

Automatic nuclei and cytoplasm segmentation of leukocytes with color and texture-based image enhancement.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Texture analysis of tissue aging using global and cluster constrained local coding.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015
Large Margin Local Estimate With Applications to Medical Image Classification.
IEEE Trans. Medical Imaging, 2015

Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Locality-constrained Subcluster Representation Ensemble for lung image classification.
Medical Image Anal., 2015

SIMAT: GC-SIM-MS data analysis tool.
BMC Bioinform., 2015

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
Bioinform., 2015

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform., 2015

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015

Learning Shape-Driven Segmentation Based on Neural Network and Sparse Reconstruction Toward Automated Cell Analysis of Cervical Smears.
Proceedings of the Neural Information Processing - 22nd International Conference, 2015

2014
Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses.
IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol., 2014

AISAIC: a software suite for accurate identification of significant aberrations in cancers.
Bioinform., 2014

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform., 2014

Enhancing the convex analysis of mixtures technique for estimating DCE-MRI pharmacokinetic parameters.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

2013
Profile-Based LC-MS Data Alignment-A Bayesian Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

The CAM software for nonnegative blind source separation in R-Java.
J. Mach. Learn. Res., 2013

Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling.
BMC Bioinform., 2013

Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards.
Bioinform., 2013

2012
Nonlinear System Modeling With Random Matrices: Echo State Networks Revisited.
IEEE Trans. Neural Networks Learn. Syst., 2012

Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process., 2012

Computational analysis of muscular dystrophy sub-types using a novel integrative scheme.
Neurocomputing, 2012

Improving Text Search on Hybrid Data.
Proceedings of the Web-Age Information Management, 2012

Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Context Enhanced Graphical Model for Object Localization in Medical Images.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2012

Location classification of lung nodules with optimized graph construction.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Normalization of LC-MS data using Gaussian process.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Object localization in medical images based on graphical model with contrast and interest-region terms.
Proceedings of the 2012 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, 2012

Evaluation of normalization methods for analysis of LC-MS data.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Tissue-Specific Compartmental Analysis for Dynamic Contrast-Enhanced MR Imaging of Complex Tumors.
IEEE Trans. Medical Imaging, 2011

Omni-tomography/Multi-tomography -- Integrating Multiple Modalities for Simultaneous Imaging
CoRR, 2011

Identifying cancer biomarkers by network-constrained support vector machines.
BMC Syst. Biol., 2011

Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform., 2011

DDN: a caBIG<sup>®</sup> analytical tool for differential network analysis.
Bioinform., 2011

BACOM: <i>in silico</i> detection of genomic deletion types and correction of normal cell contamination in copy number data.
Bioinform., 2011

PUGSVM: a caBIG<sup>TM</sup> analytical tool for multiclass gene selection and predictive classification.
Bioinform., 2011

CAM-CM: a signal deconvolution tool for <i>in vivo</i> dynamic contrast-enhanced imaging of complex tissues.
Bioinform., 2011

Bayesian Alignment Model for LC-MS Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Quality assessment of LC-MS metabolomic data.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Knowledge-guided differential dependency network learning for detecting structural changes in biological networks.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
Nonnegative Least-Correlated Component Analysis for Separation of Dependent Sources by Volume Maximization.
IEEE Trans. Pattern Anal. Mach. Intell., 2010

Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res., 2010

Analysing DNA copy number changes using Fused Margin Regression.
Int. J. Funct. Informatics Pers. Medicine, 2010

Knowledge-guided gene ranking by coordinative component analysis.
BMC Bioinform., 2010

Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform., 2010

Learning Structural Changes of Gaussian Graphical Models in Controlled Experiments.
Proceedings of the UAI 2010, 2010

Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

2009
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
Int. J. Data Min. Bioinform., 2009

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des., 2009

Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinform., 2009

An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions.
Bioinform., 2009

A Graph-Based Approach for Clustering Analysis of Gene Expression Data by Using Topological Features.
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009

Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

Analyzing DNA Copy Number Changes Using Fused Margin Regression.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
A Convex Analysis Framework for Blind Separation of Non-Negative Sources.
IEEE Trans. Signal Process., 2008

Extensions of transductive learning for distributed ensemble classification and application to biometric authentication.
Neurocomputing, 2008

caBIG<sup>TM</sup> VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
BMC Bioinform., 2008

Motif-directed network component analysis for regulatory network inference.
BMC Bioinform., 2008

Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform., 2008

Integrative Network Component Analysis for Regulatory Network Reconstruction.
Proceedings of the Bioinformatics Research and Applications, 2008

Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
Proceedings of the Bioinformatics Research and Applications, 2008

Convex analysis and separation of composite signals in DCE-MRI.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Imaging biomarker analysis of rat mammary fat pads and glandular tissues in MRI images.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

Network-Constrained Support Vector Machine for Classification.
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

3-D Deformation Guided On-Line Modification of Multi-leaf Collimators for Adaptive Radiation Therapy.
Proceedings of the Image Analysis and Recognition, 5th International Conference, 2008

Blind separation of non-negative sources by convex analysis: Effective method using linear programming.
Proceedings of the IEEE International Conference on Acoustics, 2008

Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
Proceedings of the International Conference on Bioinformatics, 2008

2007
Improved Diagnostics Using Polarization Imaging and Artificial Neural Networks.
Int. J. Biomed. Imaging, 2007

Gene Selection for Multiclass Prediction by Weighted Fisher Criterion.
EURASIP J. Bioinform. Syst. Biol., 2007

VISDA: an open-source caBIG<sup>TM</sup> analytical tool for data clustering and beyond.
Bioinform., 2007

Rat Mammary Gland Analysis in T1 Weighted MR Images.
Proceedings of the IAPR Conference on Machine Vision Applications (IAPR MVA 2007), 2007

Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis.
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

Rat Mammary Fat Pad Segmentation and Growth Rate Evaluation in T1 Weighted MR Images.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Nonrigid Medical Image Registration by Finite-Element Deformable Sheet-Curve Models.
Int. J. Biomed. Imaging, 2006

Modeling and Reconstruction of Mixed Functional and Molecular Patterns.
Int. J. Biomed. Imaging, 2006

Multisensor Processing for Signal Extraction and Applications.
EURASIP J. Adv. Signal Process., 2006

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinform., 2006

Blind Separation of Multichannel Biomedical Image Patterns by Non-negative Least-Correlated Component Analysis.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

Blind Source Separation with Pattern Expression NMF.
Proceedings of the Advances in Neural Networks - ISNN 2006, Third International Symposium on Neural Networks, Chengdu, China, May 28, 2006

Transmission ultrasound computed tomography using a PE-CMOS sensor array: a preliminary animal study.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

ModVis: An information visualization tool for gene module discovery.
Proceedings of the ISCA 19th International Conference on Computer Applications in Industry and Engineering, 2006

2005
Normalization of Microarray Data by Iterative Nonlinear Regression.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004
Non-Rigid Image Registration by Neural Computation.
J. VLSI Signal Process., 2004

Output-threshold coupled neural network for solving the shortest path problems.
Sci. China Ser. F Inf. Sci., 2004

Gene selection in class space for molecular classification of cancer.
Sci. China Ser. F Inf. Sci., 2004

Computed Simultaneous Imaging of Multiple Functional Biomarkers.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Simultaneous Estimation of Kinetic Parameters and the Input Function from DCE-MRI Data: Theory and Simulation.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling.
Proceedings of the 17th International Conference on Pattern Recognition, 2004

Image fusion based on non-negative matrix factorization.
Proceedings of the 2004 International Conference on Image Processing, 2004

A discontinuity-embedded deformable model for surface modeling.
Proceedings of the Second IASTED International Conference on Circuits, 2004

2003
Discriminatory Mining of Gene Expression Microarray Data.
J. VLSI Signal Process., 2003

Partially-independent component analysis for tissue heterogeneity correction in microarray gene expression analysis.
Proceedings of the NNSP 2003, 2003

Computed simultaneous imaging of multiple biomarkers.
Proceedings of the NNSP 2003, 2003

Partially independent component analysis of tumor heterogeneities by DCE-MRI.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Finite-element deformable sheet-curve models for registration of breast MR images.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Computational intelligence approach for gene expression data mining and classification.
Proceedings of the 2003 IEEE International Conference on Multimedia and Expo, 2003

2002
A Multiple Circular Paths Convolution Neural Network System for Detection of Mammographic Masses.
IEEE Trans. Medical Imaging, 2002

Iterative normalization of cDNA microarray data.
IEEE Trans. Inf. Technol. Biomed., 2002

Information-theoretic matching of two point sets.
IEEE Trans. Image Process., 2002

Enhanced lung cancer detection in temporal subtraction chest radiography using directional edge filtering techniques.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

Mixture of principal axes registration: a neural computation approach.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

MR-image-based tissue analysis and its clinical applications.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

Independent component imaging of disease signatures.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

2001
Computerized Radiographic Mass Detection - Part II: Decision Support by Featured Database Visualization and Modular Neural Networks.
IEEE Trans. Medical Imaging, 2001

Computerized Radiographic Mass Detection - Part I: Lesion Site Selection by Morphological Enhancement and Contextual Segmentation.
IEEE Trans. Medical Imaging, 2001

Magnetic resonance image analysis by information theoretic criteria and stochastic site models.
IEEE Trans. Inf. Technol. Biomed., 2001

Mixture of Principal Axes Registration for Change Analysis in Computer-Aided Diagnosis.
Proceedings of the 30th Applied Image Pattern Recognition Workshop (AIPR 2001), 2001

2000
Probabilistic principal component subspaces: a hierarchical finite mixture model for data visualization.
IEEE Trans. Neural Networks Learn. Syst., 2000

Patient site model supported change detection.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

Computer-based decision support system: visual mapping of featured database in computer-aided diagnosis.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

Model Supported Image Registration and Warping for Change Detection in Computer-aided Diagnosis.
Proceedings of the 29th Applied Image Pattern Recognition Workshop (AIPR 2000), 2000

1999
Hierarchical probabilistic principal component subspaces for data visualization.
Proceedings of the International Joint Conference Neural Networks, 1999

Tactile Mapping of Palpable Abnormalities for Breast Cancer Diagnosis.
Proceedings of the 1999 IEEE International Conference on Robotics and Automation, 1999

1998
Quantitative Analysis of MR Brain Image Sequences by Adaptive Self-Organizing Finite Mixtures.
J. VLSI Signal Process., 1998

Data mapping by probabilistic modular networks and information-theoretic criteria.
IEEE Trans. Signal Process., 1998

Quantification and segmentation of brain tissues from MR images: a probabilistic neural network approach.
IEEE Trans. Image Process., 1998

A blockwise relaxation labeling scheme and its application to edge detection in cardiac MR image sequences.
Int. J. Imaging Syst. Technol., 1998

Detection of mammographic masses using sector features with a multiple-circular-path neural network.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

3-D Model Supported Prostrate Biopsy Simulation and Evaluation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

1997
Surface reconstruction and visualization of the surgical prostate model.
Proceedings of the Medical Imaging 1997: Image Display, 1997

Statistical modeling and visualization of localized prostate cancer.
Proceedings of the Medical Imaging 1997: Image Display, 1997

Dyadic decomposition: a unified perspective on predictive, subband, and wavelet transforms.
Proceedings of the Medical Imaging 1997: Image Display, 1997

Stereo-vision system for finger tracking in breast self-examination.
Proceedings of the Medical Imaging 1997: Image Display, 1997

Color-feature-based finger tracking for breast palpation quantification.
Proceedings of the 1997 IEEE International Conference on Robotics and Automation, 1997

A Deformable Surface-Spine Model for 3-D Surface Registration.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

Modeling of Wavelet Coefficients in Medical Image Compression.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

Stochastic Model and Probabilistic Decision-Based Calssifier for Mass Detection in Digital Mammography.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

1995
Segmentation of magnetic resonance brain image: integrating region growing and edge detection.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995

1994
Probabilistic Neural Networks for Medical Image Quantification.
Proceedings of the Proceedings 1994 International Conference on Image Processing, 1994


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