Lenwood S. Heath

BMC Bioinform., 2021

2020

LINbase: a web server for genome-based identification of prokaryotes as members of crowdsourced taxa.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2020

ARGminer: a web platform for the crowdsourcing-based curation of antibiotic resistance genes.

[BibT_eX]

[DOI]

Gustavo A. Arango-Argoty

Bioinform., 2020

A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples.

[BibT_eX]

[DOI]

Gustavo A. Arango-Argoty

Proceedings of the Computational Advances in Bio and Medical Sciences, 2020

2019

MCAT: Motif Combining and Association Tool.

[BibT_eX]

[DOI]

J. Comput. Biol., 2019

2017

Bioinformatics of DNA [Scanning the Issue].

[BibT_eX]

[DOI]

Proc. IEEE, 2017

Beacon Editor: Capturing Signal Transduction Pathways Using the Systems Biology Graphical Notation Activity Flow Language.

[BibT_eX]

[DOI]

J. Comput. Biol., 2017

PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference.

[BibT_eX]

[DOI]

Doaa Altarawy

Fatma-Elzahraa Eid

J. Comput. Biol., 2017

MicroTarget: MicroRNA target gene prediction approach with application to breast cancer.

[BibT_eX]

[DOI]

Hanaa Torkey

Mahmoud ElHefnawi

J. Bioinform. Comput. Biol., 2017

New methods to generate massive synthetic networks.

[BibT_eX]

[DOI]

Malay Chakrabarti

Naren Ramakrishnan

CoRR, 2017

2016

Labeled cuts in graphs.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2016

DeNovo: virus-host sequence-based protein-protein interaction prediction.

[BibT_eX]

[DOI]

Fatma-Elzahraa Eid

Mahmoud ElHefnawi

Bioinform., 2016

2015

CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements.

[BibT_eX]

[DOI]

Eman Badr

BMC Bioinform., 2015

2014

Identifying Splicing Regulatory Elements with de Bruijn Graphs.

[BibT_eX]

[DOI]

Eman Badr

J. Comput. Biol., 2014

2013

Mining Posets from Linear Orders.

[BibT_eX]

[DOI]

Discret. Math. Algorithms Appl., 2013

2012

Sorting genomes using almost-symmetric inversions.

[BibT_eX]

[DOI]

Proceedings of the ACM Symposium on Applied Computing, 2012

2011

A Theoretical Model for Whole Genome Alignment.

[BibT_eX]

[DOI]

Nahla A. Belal

J. Comput. Biol., 2011

A Network of SCOP Hidden Markov Models and Its Analysis.

[BibT_eX]

[DOI]

Liqing Zhang

Layne T. Watson

K. S. M. Tozammel Hossain

BMC Bioinform., 2011

2010

Extracting temporal signatures for comprehending systems biology models.

[BibT_eX]

[DOI]

Naren Sundaravaradan

Proceedings of the 16th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2010

2009

Multimodal Networks: Structure and Operations.

[BibT_eX]

[DOI]

Allan A. Sioson

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Semantics of Multimodal Network Models.

[BibT_eX]

[DOI]

Allan A. Sioson

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

2008

CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2008

Using Cost-Sensitive Learning to Determine Gene Conversions.

[BibT_eX]

[DOI]

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008

2007

Genomic Signatures in De Bruijn Chains.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

Genomic Signatures from DNA Word Graphs.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

Predicting Markov Chain Order in Genomic Sequences.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

XcisClique: analysis of regulatory bicliques.

[BibT_eX]

[DOI]

Cecilia Vasquez-Robinet

Ruth Grene

T. M. Murali

BMC Bioinform., 2006

2005

The PMU Placement Problem.

[BibT_eX]

[DOI]

Dennis J. Brueni

SIAM J. Discret. Math., 2005

H++: a server for estimating pKas and adding missing hydrogens to macromolecules.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2005

2004

New algorithms for generating Conway polynomials over finite fields.

[BibT_eX]

[DOI]

Nicholas A. Loehr

J. Symb. Comput., 2004

2003

Sorting by Short Swaps.

[BibT_eX]

[DOI]

J. Comput. Biol., 2003

Expresso and Chips: Creating a Next Generation Microarray Experiment Management System.

[BibT_eX]

[DOI]

Allan A. Sioson

Jonathan I. Watkinson

Cecilia Vasquez-Robinet

Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003

2002

The Emerging Landscape of Bioinformatics Software Systems.

[BibT_eX]

[DOI]

Naren Ramakrishnan

Computer, 2002

Networks in Bioinformatics.

[BibT_eX]

[DOI]

Proceedings of the International Symposium on Parallel Architectures, 2002

2001

Constructing Homomorphism Spaces and Endomorphism Rings.

[BibT_eX]

[DOI]

Edward L. Green

Craig A. Struble

J. Symb. Comput., 2001

The pagenumber of k-trees is O(k).

[BibT_eX]

[DOI]

Discret. Appl. Math., 2001

The Expresso Microarray Experiment Management System: The Functional Genomics of Stress Responses in Loblolly Pine

[BibT_eX]

[DOI]

CoRR, 2001

Graph separators with applications.

[BibT_eX]

Frontiers of computer science, Kluwer, ISBN: 978-0-306-46464-5, 2001

2000

Sorting by Short Block-Moves.

[BibT_eX]

[DOI]

Algorithmica, 2000

Constructing endomorphism rings via duals.

[BibT_eX]

[DOI]

Edward L. Green

Craig A. Struble

Proceedings of the 2000 International Symposium on Symbolic and Algebraic Computation, 2000

1999

Stack and Queue Layouts of Directed Acyclic Graphs: Part I.

[BibT_eX]

[DOI]

Ann N. Trenk

SIAM J. Comput., 1999

Stack and Queue Layouts of Directed Acyclic Graphs: Part II.

[BibT_eX]

[DOI]

SIAM J. Comput., 1999

Efficient Construction of Drinfel'd Doubles.

[BibT_eX]

[DOI]

Proceedings of the 1999 International Symposium on Symbolic and Algebraic Computation, 1999

1998

Edge-Packing in Planar Graphs.

[BibT_eX]

[DOI]

Theory Comput. Syst., 1998

Sorting by Bounded Block-moves.

[BibT_eX]

[DOI]

Discret. Appl. Math., 1998

Edge-packing Planar Graphs by Cyclic Graphs.

[BibT_eX]

[DOI]

Discret. Appl. Math., 1998

An Experimental Evaluation of Local Search Heuristics for Graph Partitioning.

[BibT_eX]

[DOI]

Computing, 1998

1997

Stack and Queue Layouts of Posets.

[BibT_eX]

[DOI]

SIAM J. Discret. Math., 1997

Graph Embeddings and Simplicial Maps.

[BibT_eX]

[DOI]

Theory Comput. Syst., 1997

Opal: A System for Computing Noncommutative Gröbner Bases.

[BibT_eX]

[DOI]

Edward L. Green

Benjamin J. Keller

Proceedings of the Rewriting Techniques and Applications, 8th International Conference, 1997

1996

Visualizing Search Results: Some Alternatives to Query-Document Similarity.

[BibT_eX]

[DOI]

Proceedings of the 19th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 1996

Using the Swan data structure visualization system for computer science education.

[BibT_eX]

[DOI]

Clifford A. Shaffer

Jun Yang

Proceedings of the 27th SIGCSE Technical Symposium on Computer Science Education, 1996

1995

Envision: A User-Centered Database of Computer Science Literature.

[BibT_eX]

[DOI]

Guillermo A. Averboch

Commun. ACM, 1995

SWAN: A Data Structure Visualization System.

[BibT_eX]

[DOI]

Jun Yang

Clifford A. Shaffer

Proceedings of the Graph Drawing, Symposium on Graph Drawing, 1995

Recognizing Leveled-Planar Dags in Linear Time.

[BibT_eX]

[DOI]

Proceedings of the Graph Drawing, Symposium on Graph Drawing, 1995

1994

Heuristics for laying out information graphs.

[BibT_eX]

[DOI]

Computing, 1994

Optimal and Random Partitions of Random Graphs.

[BibT_eX]

[DOI]

Comput. J., 1994

New Results for the Minimum Weight Triangulation Problem.

[BibT_eX]

[DOI]

Algorithmica, 1994

1993

Users, User Interfaces, and Objects: Envision, a Digital Library.

[BibT_eX]

[DOI]

J. Am. Soc. Inf. Sci., 1993

Generalized comparison of quadtree and bintree storage requirements.

[BibT_eX]

[DOI]

Clifford A. Shaffer

Ramana Juvvadi

Image Vis. Comput., 1993

Representing Polyhedra: Faces Are Better Than Vertices.

[BibT_eX]

[DOI]

Praveen K. Paripati

John W. Roach

Comput. Geom., 1993

Lower Bounds for Graph Embeddings via Algebraic Topology.

[BibT_eX]

[DOI]

Proceedings of the 5th Annual ACM Symposium on Parallel Algorithms and Architectures, 1993

What If There Were Desktop Access to the Computer Science Literature?

[BibT_eX]

[DOI]

Proceedings of the ACM 21th Conference on Computer Science, 1993

1992

Comparing Queues and Stacks as Mechanisms for Laying out Graphs.

[BibT_eX]

[DOI]

Frank Thomson Leighton

SIAM J. Discret. Math., 1992

Laying out Graphs Using Queues.

[BibT_eX]

[DOI]

SIAM J. Comput., 1992

The Pagenumber of Genus g Graphs is O(g).

[BibT_eX]

[DOI]

Sorin Istrail

J. ACM, 1992

Practical Minimal Perfect Hash Functions for Large Databases.

[BibT_eX]

[DOI]

Commun. ACM, 1992

A Faster Algorithm for Constructing Minimal Perfect Hash Functions.

[BibT_eX]

[DOI]

Edward A. Fox

Qi Fan Chen

Proceedings of the 15th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval. Copenhagen, 1992

Hashing Algorithms.

[BibT_eX]

Proceedings of the Information Retrieval: Data Structures & Algorithms, 1992

1991

Order-Preserving Minimal Perfect Hash Functions and Information Retrieval.

[BibT_eX]

[DOI]

ACM Trans. Inf. Syst., 1991

Edge Coloring Planar Graphs with Two Outerplanar Subgraphs.

[BibT_eX]

[DOI]

Proceedings of the Second Annual ACM/SIGACT-SIAM Symposium on Discrete Algorithms, 1991

Stack and Queue Layouts of Directed Planar Graphs.

[BibT_eX]

[DOI]

Ann N. Trenk

Proceedings of the Planar Graphs, 1991

1990

Optimal Embeddings of Butterfly-Like Graphs in the Hypercube.

[BibT_eX]

[DOI]

David S. Greenberg

Math. Syst. Theory, 1990

Covering a Set with Arithmetic Progressions is NP-Complete.

[BibT_eX]

[DOI]

Inf. Process. Lett., 1990

1989

A More Cost Effective Algorithm for Finding Perfect Hash Functions.

[BibT_eX]

[DOI]

Proceedings of the Computer Trends in the 1990s, 1989

1988

The physical mapping problem for parallel architectures.

[BibT_eX]

[DOI]

Bruce T. Smith

J. ACM, 1988

1984

Embedding Planar Graphs in Seven Pages

[BibT_eX]

[DOI]