Lin Zhang

According to our database, Lin Zhang authored at least 32 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

MSCAN: multi-scale self- and cross-attention network for RNA methylation site prediction.

Honglei Wang, Tao Huang, Dong Wang, Wenliang Zeng, Yanjing Sun, Lin Zhang

BMC Bioinform., December, 2024

2023

MULGA, a unified multi-view graph autoencoder-based approach for identifying drug-protein interaction and drug repositioning.

Jiani Ma, Chen Li, Yiwen Zhang, Zhikang Wang, Shanshan Li, Yuming Guo, Lin Zhang, Hui Liu, Xin Gao, Jiangning Song

Bioinform., September, 2023

FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data.

Shutao Chen, Lin Zhang, Xiangzhi Chen, Hui Liu

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

BDBB: A Novel Beta-Distribution-Based Biclustering Algorithm for Revealing Local Co-Methylation Patterns in Epi-Transcriptome Profiling Data.

Zhaoyang Liu, Yuteng Xiao, Hongsheng Yin, Xiaodan Li, Shutao Chen, Kaijian Xia, Lin Zhang

IEEE J. Biomed. Health Informatics, 2022

BRPCA: Bounded Robust Principal Component Analysis to Incorporate Similarity Network for N7-Methylguanosine(m⁷G) Site-Disease Association Prediction.

Jiani Ma, Lin Zhang, Shaojie Li, Hui Liu

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model.

Shutao Chen, Lin Zhang, Lin Lu, Jia Meng, Hui Liu

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Pedestrian Detection with Multi-View Convolution Fusion Algorithm.

Yuhong Liu, Chunyan Han, Lin Zhang, Xin Gao

Entropy, 2022

EMDLP: Ensemble multiscale deep learning model for RNA methylation site prediction.

Honglei Wang, Hui Liu, Tao Huang, Gangshen Li, Lin Zhang, Yanjing Sun

BMC Bioinform., 2022

LRTCLS: low-rank tensor completion with Laplacian smoothing regularization for unveiling the post-transcriptional machinery of <i>N</i>6-methylation (m6A)-mediated diseases.

Jiani Ma, Hui Liu, Yumeng Mao, Lin Zhang

Briefings Bioinform., 2022

2021

ARMS Net: Overlapping chromosome segmentation based on Adaptive Receptive field Multi-Scale network.

Guangjie Wang, Hui Liu, Xianpeng Yi, Jinjun Zhou, Lin Zhang

Biomed. Signal Process. Control., 2021

EDLm⁶APred: ensemble deep learning approach for mRNA m⁶A site prediction.

Lin Zhang, Gangshen Li, Xiuyu Li, Honglei Wang, Shutao Chen, Hui Liu

BMC Bioinform., 2021

m7GDisAI: N7-methylguanosine (m7G) sites and diseases associations inference based on heterogeneous network.

Jiani Ma, Lin Zhang, Jin Chen, Bowen Song, Chenxuan Zang, Hui Liu

BMC Bioinform., 2021

Lysosome activation in peripheral blood mononuclear cells and prognostic significance of circulating LC3B in COVID-19.

Shisong Fang, Lin Zhang, Yingzhi Liu, Wenye Xu, Weihua Wu, Ziheng Huang, Xin Wang, Hui Liu, Ying Sun, Renli Zhang, Bo Peng, Xiaodong Liu, Xiao Sun, Jun Yu, Francis Ka-Leung Chan, Siew Chien Ng, Sunny Hei Wong, Maggie Haitian Wang, Tony Gin, Gavin Matthew Joynt, David Shu Cheong Hui, Tiejian Feng, William Ka Kei Wu, Matthew Tak Vai Chan, Xuan Zou, Junjie Xia

Briefings Bioinform., 2021

2020

REW-ISA: unveiling local functional blocks in epi-transcriptome profiling data via an RNA expression-weighted iterative signature algorithm.

Lin Zhang, Shutao Chen, Jingyi Zhu, Jia Meng, Hui Liu

BMC Bioinform., 2020

2019

m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network.

Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu, Lin Zhang, Jia Meng

BMC Bioinform., 2019

RNA methylation and diseases: experimental results, databases, Web servers and computational models.

Xing Chen, Ya-Zhou Sun, Hui Liu, Lin Zhang, Jian-Qiang Li, Jia Meng

Briefings Bioinform., 2019

2018

MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data.

Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome.

Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang

Nucleic Acids Res., 2018

trumpet: transcriptome-guided quality assessment of m6A-seq data.

Teng Zhang, Shao-Wu Zhang, Lin Zhang, Jia Meng

BMC Bioinform., 2018

2017

Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net.

Lin Zhang, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

2015

MeT-DB: a database of transcriptome methylation in mammalian cells.

Hui Liu, Mario A. Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang

Nucleic Acids Res., 2015

Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates.

Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shaowu Zhang, Yufei Huang, Jia Meng

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Differential analysis of RNA methylome with improved spatial resolution.

Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test.

Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

2013

Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer.

Lin Zhang, Hui Liu, Jia Meng, Xuesong Wang, Yidong Chen, Yufei Huang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Unveiling the dynamics in RNA epigenetic regulations.

Jia Meng, Xiaodong Cui, Hui Liu, Lin Zhang, Shaowu Zhang, Manjeet K. Rao, Yidong Chen, Yufei Huang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer.

Lin Zhang, Hui Liu, Tzu-Hung Hsiao, Yidong Chen, Yufei Huang

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

2011

Clustering DNA methylation expressions using nonparametric beta mixture model.

Lin Zhang, Jia Meng, Hui Liu, Yufei Huang

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010

Bayesian peptide peak detection for high resolution TOF mass spectrometry.

Jianqiu Zhang, Xiaobo Zhou, Honghui Wang, Anthony Suffredini, Lin Zhang, Yufei Huang, Stephen T. C. Wong

IEEE Trans. Signal Process., 2010

miRNA Target Prediction Method Based on the Combination of Multiple Algorithms.

Lin Zhang, Hui Liu, Dong Yue, Hui He, Yufei Huang

Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

SysMicrO: A Novel Systems Approach for miRNA Target Prediction.

Hui Liu, Lin Zhang, Qilong Sun, Yidong Chen, Yufei Huang

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2010

2009

A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling.

Hui Liu, Lin Zhang, Shou-Jiang Gao, Yufei Huang

Proceedings of the International Joint Conferences on Bioinformatics, 2009