Mark H. Ellisman

According to our database1, Mark H. Ellisman authored at least 49 papers between 1992 and 2017.

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Bibliography

2017
Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.
PLoS Computational Biology, 2017

Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections.
Bioinformatics, 2017

2016
Biological Systems Through the Informational Lens.
Proceedings of the International Conference on Computational Science 2016, 2016

2015
Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes.
PLoS Computational Biology, 2015

2014
EPiK-a Workflow for Electron Tomography in Kepler.
Proceedings of the International Conference on Computational Science, 2014

Poster: BrainTrek - An immersive environment for investigating neuronal tissue.
Proceedings of the IEEE Symposium on 3D User Interfaces, 2014

2013
Iterative Methods in Large Field Electron Microscope Tomography.
SIAM J. Scientific Computing, 2013

Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images.
Neuroinformatics, 2013

The cell: an image library-CCDB: a curated repository of microscopy data.
Nucleic Acids Research, 2013

DP2: Distributed 3D image segmentation using micro-labor workforce.
Bioinformatics, 2013

Segmentation of mitochondria in electron microscopy images using algebraic curves.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Neuron segmentation in electron microscopy images using partial differential equations.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Semi-automatic neuron segmentation in electron microscopy images via sparse labeling.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Watershed merge forest classification for electron microscopy image stack segmentation.
Proceedings of the IEEE International Conference on Image Processing, 2013

2012
Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics.
Proceedings of the International Conference on Computational Science, 2012

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets.
BMC Bioinformatics, 2012

Electron Tomography and Multiscale Biology.
Proceedings of the Theory and Applications of Models of Computation, 2012

Watershed merge tree classification for electron microscopy image segmentation.
Proceedings of the 21st International Conference on Pattern Recognition, 2012

2011
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
Nucleic Acids Research, 2011

Detection of Neuron Membranes in Electron Microscopy Images Using Multi-scale Context and Radon-Like Features.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011


Case Study on the Use of REST Architectural Principles for Scientific Analysis: CAMERA - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis.
Proceedings of the REST: From Research to Practice, 2011

2010
CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows.
Proceedings of the 6th World Congress on Services, 2010

2007
Examining the Challenges of Scientific Workflows.
IEEE Computer, 2007

2006
High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders.
Neuroinformatics, 2006

Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter.
Future Generation Comp. Syst., 2006

The OptIPuter: high-performance, QoS-guaranteed network service for emerging E-science applications.
IEEE Communications Magazine, 2006

"Big Science" and Schizophrenia.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Enabling parallel scientific applications with workflow tools.
Proceedings of the 2006 IEEE Challenges of Large Applications in Distributed Environments, 2006

Semantically Based Data Integration Environment for Biomedical Research.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005
Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.
Neuroinformatics, 2005

Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease.
Proceedings of the From Grid to Healthgrid, 2005

A Generalized Service-Oriented Architecture for Remote Control of Scientific Imaging Instruments.
Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005

The Telescience Tools: Version 2.0.
Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005

Scientific grid activities in Cybermedia Center, Osaka University.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

The Telescience Project: Application to Middleware Interaction Components.
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

2004
The Virtual Instrument: Support for Grid-Enabled Mcell Simulations.
IJHPCA, 2004

The emerging role of biogrids.
Commun. ACM, 2004

2003
The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy.
Neuroinformatics, 2003

The Telescience Portal for advanced tomography applications.
J. Parallel Distrib. Comput., 2003

Global Telescience featuring IPv6 at iGrid2002.
Future Generation Comp. Syst., 2003

Vertigo in Virtual Reality with Haptics: Case Report.
Cyberpsy., Behavior, and Soc. Networking, 2003

Data-intensive e-science frontier research.
Commun. ACM, 2003

Spatially Realistic Computational Physiology: Past, Present and Future.
Proceedings of the Parallel Computing: Software Technology, 2003

2002
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures.
Proceedings of the High Performance Computing for Computational Science, 2002

2000
Combining Workstations and Supercomputers to Support Grid Applications: The Parallel Tomography Experience.
Proceedings of the 9th Heterogeneous Computing Workshop, 2000

1998
Data-Intensive Computing and Digital Libraries.
Commun. ACM, 1998

1996
Implementing a Collaboratory for Microscopic Digital Anatomy.
IJHPCA, 1996

1992
The Distributed Laboratory - An Interactive Visualization Environment for Electron Microscopy and 3D Imaging.
Commun. ACM, 1992


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