Jeffrey S. Grethe

Orcid: 0000-0001-5212-7052

According to our database1, Jeffrey S. Grethe authored at least 49 papers between 2003 and 2023.

Collaborative distances:



In proceedings 
PhD thesis 


Online presence:



NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query.
Frontiers Neuroinformatics, March, 2023

The Antibody Registry: ten years of registering antibodies.
Nucleic Acids Res., January, 2023

Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (
Neuroinformatics, 2022

Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.
Neuroinformatics, 2022

Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Neuroinformatics, 2022

A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Neuroinformatics, 2022

Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project.
Frontiers Neuroinformatics, 2022

The Neuroimaging Data Model Linear Regression Tool (nidm_linreg): PyNIDM Project.
F1000Research, 2022

Antibody Watch: Text mining antibody specificity from the literature.
PLoS Comput. Biol., 2021

Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts.
Comput. Sci. Eng., 2020

Bio-AnswerFinder: a system to find answers to questions from biomedical texts.
Database J. Biol. Databases Curation, 2020

Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging.
Frontiers Neuroinformatics, 2019

Advancing the international data science workforce through shared training and education.
F1000Research, 2019

How BIDs and BIDs validator has informed the data aggregation needs of the Stimulating Peripheral Activity to Relieve Conditions, SPARC, consortium.
Proceedings of Workshop on Research Objects (RO2019), 2019

Iterative Document Retrieval via Deep Learning Approaches for Biomedical Question Answering.
Proceedings of the 15th International Conference on eScience, 2019

DataMed - an open source discovery index for finding biomedical datasets.
J. Am. Medical Informatics Assoc., 2018

Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.
Database J. Biol. Databases Curation, 2018

Assessing value of biomedical digital repositories.
PeerJ Prepr., 2017

The Resource Identification Initiative: A Cultural Shift in Publishing.
Neuroinformatics, 2016

Requirements for storing electrophysiology data.
CoRR, 2016

Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.
Frontiers Neuroinformatics, 2014

Semantic query reformulation: the NIF experience.
Proceedings of the Conference on Scientific and Statistical Database Management, 2013

Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics.
Proceedings of the International Conference on Computational Science, 2012

XCEDE: An Extensible Schema for Biomedical Data.
Neuroinformatics, 2012

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.
Database J. Biol. Databases Curation, 2012

Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience.
Proceedings of the Formal Ontology in Information Systems, 2012

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
Nucleic Acids Res., 2011

NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Case Study on the Use of REST Architectural Principles for Scientific Analysis: CAMERA - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis.
Proceedings of the REST: From Research to Practice, 2011

Federated Web-accessible Clinical Data Management within an Extensible NeuroImaging Database.
Neuroinformatics, 2010

CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows.
Proceedings of the 6th World Congress on Services, 2010

Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid.
Frontiers Neuroinformatics, 2009

Software Development for Neuroimaging: Promoting Community Access And Best Practices Through NITRC.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Ontology driven data integration for autism research.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

A National Human Neuroimaging Collaboratory Enabled by the Biomedical Informatics Research Network (BIRN).
IEEE Trans. Inf. Technol. Biomed., 2008

Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF).
Neuroinformatics, 2008

The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience.
Neuroinformatics, 2008

The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience.
Neuroinformatics, 2008

Case Studies on the Use of Workflow Technologies for Scientific Analysis: The Biomedical Informatics Research Network and the Telescience Project.
Proceedings of the Workflows for e-Science, Scientific Workflows for Grids., 2007

A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels.
Neuroinformatics, 2006

"Big Science" and Schizophrenia.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Semantically Based Data Integration Environment for Biomedical Research.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

A Web Portal that Enables Collaborative Use of Advanced Medical Image Processing and Informatics Tools through the Biomedical Informatics Research Network (BIRN).
Proceedings of the AMIA 2006, 2006

Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease.
Proceedings of the From Grid to Healthgrid, 2005

Data Integration in the Biomedical Informatics Research Network (BIRN).
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005

Towards a formalization of disease-specific ontologies for neuroinformatics.
Neural Networks, 2003