Minghua Deng

According to our database1, Minghua Deng authored at least 38 papers between 2000 and 2018.

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Bibliography

2018
RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.
BMC Bioinformatics, 2018

2017
gCoda: Conditional Dependence Network Inference for Compositional Data.
Journal of Computational Biology, 2017

Pysim-sv: a package for simulating structural variation data with GC-biases.
BMC Bioinformatics, 2017

SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.
Bioinformatics, 2017

VCNet: vector-based gene co-expression network construction and its application to RNA-seq data.
Bioinformatics, 2017

2016
A network based covariance test for detecting multivariate eQTL in saccharomyces cerevisiae.
BMC Systems Biology, 2016

Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.
Bioinformatics, 2016

2015
Estimation of isoform expression in RNA-seq data using a hierarchical Bayesian model.
J. Bioinformatics and Computational Biology, 2015

CCLasso: correlation inference for compositional data through Lasso.
Bioinformatics, 2015

2014
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
Briefings in Bioinformatics, 2014

2013
Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads.
Journal of Computational Biology, 2013

Multiple alignment-free sequence comparison.
Bioinformatics, 2013

2012
Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract.
Proceedings of the Research in Computational Molecular Biology, 2012

2011
Integrating multiple types of data to predict novel cell cycle-related genes.
BMC Systems Biology, 2011

A Lasso regression model for the construction of microRNA-target regulatory networks.
Bioinformatics, 2011

Modular analysis of the probabilistic genetic interaction network.
Bioinformatics, 2011

Reverse Engineering of Gene Regulation Networks with an Application to the DREAM4 in silico Network Challenge.
Proceedings of the Handbook of Statistical Bioinformatics., 2011

2010
Binding Energy Landscape Analysis Helps to Discriminate True Hits from High-Scoring Decoys in Virtual Screening.
Journal of Chemical Information and Modeling, 2010

Combinatorial regulation of transcription factors and microRNAs.
BMC Systems Biology, 2010

2009
REMAS: a new regression model to identify alternative splicing events from exon array data.
BMC Bioinformatics, 2009

Searching for bidirectional promoters in Arabidopsis thaliana.
BMC Bioinformatics, 2009

Feature-Based Causal Structure Discovery in Protein and Gene Expression Data with Bayesian Network.
Proceedings of the Fifth International Conference on Natural Computation, 2009

Pathway Detection Based on Hierarchical LASSO Regression Model.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

The Implementation and Application of the Microarray Preprocessing Generalized PDNN Model.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

A Robust Empirical Bayesian Method for Detecting Differentially Expressed Genes.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008
A Method to Correct Systematic Bias in Affymetrix SNP Arrays.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

On Design of Oligonucleotide SNP Arrays and Methods for Genotype Calling.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2006
An integrated approach to the prediction of domain-domain interactions.
BMC Bioinformatics, 2006

Nonequilibrium Model for Yeast Cell Cycle.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

Using a Stochastic AdaBoost Algorithm to Discover Interactome Motif Pairs from Sequences.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

2004
Mapping gene ontology to proteins based on protein-protein interaction data.
Bioinformatics, 2004

An Improvement for Eulerian Path of Assembly.
Proceedings of the 4th IEEE International Workshop on Source Code Analysis and Manipulation (SCAM 2004), 2004

Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast.
Proceedings of the Biocomputing 2004, 2004

2003
An integrated probabilistic model for functional prediction of proteins.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Assessment of the reliability of protein-protein interactions and protein function prediction.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002
Inferring domain-domain interactions from protein-protein interactions.
Proceedings of the Sixth Annual International Conference on Computational Biology, 2002

Prediction of Protein Function Using Protein-Protein Interaction Data.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

2000
A Novel Algorithm for Handwritten Chinese Character Recognition.
Proceedings of the Advances in Multimodal Interfaces, 2000


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