Sophie Schbath

According to our database, Sophie Schbath authored at least 25 papers between 1995 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2020

DUGMO: tool for the detection of unknown genetically modified organisms with high-throughput sequencing data for pure bacterial samples.

Julie Hurel, Sophie Schbath, Stéphanie Bougeard, Mathieu Rolland, Mauro Petrillo, Fabrice Touzain

BMC Bioinform., 2020

SimkaMin: fast and resource frugal de novo comparative metagenomics.

Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, Claire Lemaitre

Bioinform., 2020

2016

Multiple comparative metagenomics using multiset <i>k</i>-mer counting.

Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre

PeerJ Comput. Sci., 2016

2012

Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis.

Sophie Schbath, Véronique Martin, Matthias Zytnicki, Julien Fayolle, Valentin Loux, Jean-François Gibrat

J. Comput. Biol., 2012

Statistical Significance of Threading Scores.

Afshin Fayyaz Movaghar, Guillaume Launay, Sophie Schbath, Jean-François Gibrat, François Rodolphe

J. Comput. Biol., 2012

Separating Significant Matches from Spurious Matches in DNA Sequences.

Hugo Devillers, Sophie Schbath

J. Comput. Biol., 2012

2011

Robustness Assessment of Whole Bacterial Genome Segmentations.

Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui

J. Comput. Biol., 2011

Occurrence of structured motifs in random sequences: Arbitrary number of boxes.

Valery T. Stefanov, Stéphane Robin, Sophie Schbath

Discret. Appl. Math., 2011

2010

Assessing the Robustness of Complete Bacterial Genome Segmentations.

Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui

Proceedings of the Comparative Genomics - International Workshop, 2010

Using graph modularity analysis to identify transcription factor binding sites.

Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

Assessing the Exceptionality of Coloured Motifs in Networks.

Sophie Schbath, Vincent Lacroix, Marie-France Sagot

EURASIP J. Bioinform. Syst. Biol., 2009

2008

Assessing the Exceptionality of Network Motifs.

Franck Picard, Jean-Jacques Daudin, Michel Koskas, Sophie Schbath, Stéphane Robin

J. Comput. Biol., 2008

SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.

Fabrice Touzain, Sophie Schbath, Isabelle Debled-Rennesson, Bertrand Aigle, Gregory Kucherov, Pierre Leblond

BMC Bioinform., 2008

2007

Waiting times for clumps of patterns and for structured motifs in random sequences.

Valery T. Stefanov, Stéphane Robin, Sophie Schbath

Discret. Appl. Math., 2007

Statistical tests to compare motif count exceptionalities.

Stéphane Robin, Sophie Schbath, Vincent Vandewalle

BMC Bioinform., 2007

2002

Numerical Comparison of Several Approximations of the Word Count Distribution in Random Sequences.

Stéphane Robin, Sophie Schbath

J. Comput. Biol., 2002

Occurrence Probability of Structured Motifs in Random Sequences.

Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath

J. Comput. Biol., 2002

2000

The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project.

Sophie Schbath, Nathalie Bossard, Simon Tavaré

J. Comput. Biol., 2000

An Overview on the Distribution of Word Counts in Markov Chains.

Sophie Schbath

J. Comput. Biol., 2000

Probabilistic and Statistical Properties of Words: An Overview.

Gesine Reinert, Sophie Schbath, Michael S. Waterman

J. Comput. Biol., 2000

1998

Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains.

Gesine Reinert, Sophie Schbath

J. Comput. Biol., 1998

1997

An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences.

Sophie Schbath

J. Comput. Biol., 1997

Coverage Processes in Physical Mapping by Anchoring Random Clones.

Sophie Schbath

J. Comput. Biol., 1997

1995

Etude asymptotique du nombre d'occurrences d'un mot dans une chaîne de Markov et application à la recherche de mots de fréquence exceptionnelle dans les séquences d'ADN.

Sophie Schbath

PhD thesis, 1995

Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences.

Sophie Schbath, Bernard Prum, Elisabeth de Turckheim

J. Comput. Biol., 1995