Nicolas Le Novère

According to our database1, Nicolas Le Novère authored at least 72 papers between 1999 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Homepages:

On csauthors.net:

Bibliography

2019
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.
J. Integrative Bioinformatics, 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integrative Bioinformatics, 2019

Community-driven roadmap for integrated disease maps.
Briefings in Bioinformatics, 2019

2018
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.
PLoS Computational Biology, 2018

BioModels: expanding horizons to include more modelling approaches and formats.
Nucleic Acids Research, 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integrative Bioinformatics, 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integrative Bioinformatics, 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integrative Bioinformatics, 2018

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.
J. Integrative Bioinformatics, 2018

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).
J. Integrative Bioinformatics, 2018

2017
SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks.
BMC Systems Biology, 2017

A brief history of COMBINE.
Proceedings of the 2017 Winter Simulation Conference, 2017

2016
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integrative Bioinformatics, 2016

The systems biology format converter.
BMC Bioinformatics, 2016

2015
Modulation of Calmodulin Lobes by Different Targets: An Allosteric Model with Hemiconcerted Conformational Transitions.
PLoS Computational Biology, 2015

BioModels: ten-year anniversary.
Nucleic Acids Research, 2015

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integrative Bioinformatics, 2015

Specifications of Standards in Systems and Synthetic Biology.
J. Integrative Bioinformatics, 2015

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
J. Integrative Bioinformatics, 2015

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integrative Bioinformatics, 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integrative Bioinformatics, 2015

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
J. Integrative Bioinformatics, 2015

COMBINE Archive Specification Version 1.
J. Integrative Bioinformatics, 2015

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.
J. Integrative Bioinformatics, 2015

SPARQL-enabled identifier conversion with Identifiers.org.
Bioinformatics, 2015

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Bioinformatics, 2015

2014
Simulation Experiment Description Markup Language (SED-ML).
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

BioModels Database: a public repository for sharing models of biological processes.
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

BioModels linked dataset.
BMC Systems Biology, 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinformatics, 2014

The EBI RDF platform: linked open data for the life sciences.
Bioinformatics, 2014

2013
Cooperative Binding.
PLoS Computational Biology, 2013

SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations.
Nucleic Acids Research, 2013

Structure, function, and behaviour of computational models in systems biology.
BMC Systems Biology, 2013

The systems biology simulation core algorithm.
BMC Systems Biology, 2013

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Systems Biology, 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Systems Biology, 2013

Towards the Collaborative Curation of the Registry underlying identifiers.org.
Database, 2013

2012
Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.
Nucleic Acids Research, 2012

Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON.
Front. Neuroinform., 2012

MELTING, a flexible platform to predict the melting temperatures of nucleic acids.
BMC Bioinformatics, 2012

Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinformatics, 2012

Qualitative translation of relations from BioPAX to SBML qual.
Bioinformatics, 2012

Delivering 'Cool URIs' That Do Not Change.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Considerations of graph-based concepts to manage of computational biology models and associated simulations.
Proceedings of the Informatik 2012, 2012

2011
Minimum Information About a Simulation Experiment (MIASE).
PLoS Computational Biology, 2011

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.
BMC Systems Biology, 2011

JSBML: a flexible Java library for working with SBML.
Bioinformatics, 2011

2010
Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP.
BMC Systems Biology, 2010

Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes.
BMC Systems Biology, 2010

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
BMC Systems Biology, 2010

Ranked retrieval of Computational Biology models.
BMC Bioinformatics, 2010

BioModels.net Web Services, a free and integrated toolkit for computational modelling software.
Briefings in Bioinformatics, 2010

2009
Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters.
BMC Systems Biology, 2009

Data Integration and Semantic Enrichment of Systems Biology Models and Simulations.
Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

2008
Multiscale Modelling of Neuronal Signalling.
Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

SED-ML - An XML Format for the Implementation of the MIASE Guidelines.
Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

2007
Molecules for memory: modelling CaMKII.
BMC Systems Biology, 2007

The long journey to a Systems Biology of neuronal function.
BMC Systems Biology, 2007

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.
BMC Systems Biology, 2007

SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML).
BMC Bioinformatics, 2007

2006
DARPP-32 Is a Robust Integrator of Dopamine and Glutamate Signals.
PLoS Computational Biology, 2006

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
Nucleic Acids Research, 2006

LGICdb: a manually curated sequence database after the genomes.
Nucleic Acids Research, 2006

CellML2SBML: conversion of CellML into SBML.
Bioinformatics, 2006

2004
The Molecular Pages of the mesotelencephalic dopamine consortium (DopaNet).
BMC Bioinformatics, 2004

2003
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinformatics, 2003

2001
LGICdb: the ligand-gated ion channel database.
Nucleic Acids Research, 2001

STOCHSIM: modelling of stochastic biomolecular processes.
Bioinformatics, 2001

MELTING, computing the melting temperature of nucleic acid duplex.
Bioinformatics, 2001

1999
The Ligand Gated Ion Channel Database.
Nucleic Acids Research, 1999


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