Noriko Hiroi

According to our database, Noriko Hiroi authored at least 19 papers between 2005 and 2013.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2013

The systems biology simulation core algorithm.

Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard R. Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger

BMC Syst. Biol., 2013

LibSBMLSim: a reference implementation of fully functional SBML simulator.

Hiromu Takizawa, Kazushige Nakamura, Akito Tabira, Yoichi Chikahara, Tatsuhiro Matsui, Noriko Hiroi, Akira Funahashi

Bioinform., 2013

In vivo oriented modeling with consideration of intracellular crowding.

Noriko Hiroi, Keisuke Iba, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Takumi Hiraiwa, Tetsuya J. Kobayashi, Kotaro Oka, Akira Funahashi

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012

From Microscopy Data to in silico Environments for in vivo Oriented Simulations.

Noriko Hiroi, Michael Klann, Keisuke Iba, Pablo de Heras Ciechomski, Shuji Yamashita, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Yasunori Okada, Kotaro Oka, Robin Mange, Michael Unger, Akira Funahashi, Heinz Koeppl

EURASIP J. Bioinform. Syst. Biol., 2012

2010

Automatic Pipeline Construction Focused on Similarity of Rate Law Functions for an FPGA-based Biochemical Simulator.

Hideki Yamada, Yui Ogawa, Tomonori Ooya, Tomoya Ishimori, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri

IPSJ Trans. Syst. LSI Des. Methodol., 2010

A datapath classification method for FPGA-based scientific application accelerator systems.

Yui Ogawa, Tomonori Ooya, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the International Conference on Field-Programmable Technology, 2010

2009

A Modular Approach to Heterogeneous Biochemical Model Simulation on an FPGA.

Hideki Yamada, Yasunori Osana, Tomoya Ishimori, Tomonori Ooya, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the ReConFig'09: 2009 International Conference on Reconfigurable Computing and FPGAs, 2009

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator.

Tomonori Ooya, Hideki Yamada, Tomoya Ishimori, Yuichiro Shibata, Yasunori Osana, Kiyoshi Oguri, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano

Proceedings of the 19th International Conference on Field Programmable Logic and Applications, 2009

Pipeline Scheduling with Input Port Constraints for an FPGA-Based Biochemical Simulator.

Tomoya Ishimori, Hideki Yamada, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Kiyoshi Oguri

Proceedings of the Reconfigurable Computing: Architectures, 2009

2008

Practical implementation of a network-based stochastic biochemical simulation system on an FPGA.

Masato Yoshimi, Yuri Nishikawa, Yasunori Osana, Akira Funahashi, Yuichiro Shibata, Hideki Yamada, Noriko Hiroi, Hiroaki Kitano, Hideharu Amano

Proceedings of the FPL 2008, 2008

2007

A Framework for Implementing a Network-Based Stochastic Biochemical Simulator on an FPGA.

Masato Yoshimi, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Hideki Yamada, Hiroaki Kitano, Hideharu Amano

Proceedings of the 2007 International Conference on Field-Programmable Technology, 2007

FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method.

Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hideki Yamada, Hiroaki Kitano, Hideharu Amano

Proceedings of the FPL 2007, 2007

A Combining technique of rate law functions for a cost-effective reconfigurable biological simulator.

Hideki Yamada, Naoki Iwanaga, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri

Proceedings of the FPL 2007, 2007

2006

An FPGA Implementation of High Throughput Stochastic Simulator for Large-Scale Biochemical Systems.

Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano

Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), 2006

Performance Evaluation of an Fpga-Based Biochemical Simulator ReCSip.

Yasunori Osana, Masato Yoshimi, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano

Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), 2006

2005

An FPGA-Based, Multi-model Simulation Method for Biochemical Systems.

Yasunori Osana, Tomonori Fukushima, Masato Yoshimi, Yow Iwaoka, Yuichiro Shibata, Hiroaki Kitano, Akira Funahashi, Noriko Hiroi, Hideharu Amano

Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

The Design of Scalable Stochastic Biochemical Simulator on FPGA.

Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano

Proceedings of the 2005 IEEE International Conference on Field-Programmable Technology, 2005

A Framework for ODE-Based Multimodel Biochemical Simulations on an FPGA.

Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Masato Yoshimi, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano

Proceedings of the 2005 International Conference on Field Programmable Logic and Applications (FPL), 2005

Efficient Scheduling of Rate Law Functions for ODE-Based Multimodel Biochemical Simulation on an FPGA.

Naoki Iwanaga, Yuichiro Shibata, Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri

Proceedings of the 2005 International Conference on Field Programmable Logic and Applications (FPL), 2005