Oliver Ratmann

According to our database, Oliver Ratmann authored at least 8 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data.

Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David G. Bonsall, George Macintyre-Cockett, Laura Thomson, Jared M. Baeten, Connie L. Celum, Ronald Galiwango, Barry Kosloff, Mohammed Limbada, Andrew Mujugira, Nelly R. Mugo, Astrid Gall, François Blanquart, Margreet Bakker, Daniela Bezemer, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Barbara Gunsenheimer-Bartmeyer, Huldrych F. Günthard, Pia Kivelä, Roger D. Kouyos, Laurence Meyer, Kholoud Porter, Ard van Sighem, Mark van der Valk, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Helen Ayles, David N. Burns, Sarah Fidler, Mary Kate Grabowski, Richard J. Hayes, Joshua T. Herbeck, Joseph Kagaayi, Pontiano Kaleebu, Jairam R. Lingappa, Deogratius Ssemwanga, Susan H. Eshleman, Myron S. Cohen, Oliver Ratmann, Oliver Laeyendecker, Christophe Fraser

BMC Bioinform., December, 2025

Artificial intelligence for modelling infectious disease epidemics.

Moritz U. G. Kraemer, Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott, Sumali Bajaj, Neil Scheidwasser, Jacob Liam Curran-Sebastian, Elizaveta Semenova, Mengyan Zhang, H. Juliette T. Unwin, Oliver J. Watson, Cathal Mills, Abhishek Dasgupta, Luca Ferretti, Samuel V. Scarpino, Etien Koua, Oliver Morgan, Houriiyah Tegally, Ulrich Paquet, Loukas Moutsianas, Christophe Fraser, Neil M. Ferguson, Eric J. Topol, David A. Duchêne, Tanja Stadler, Patricia Kingori, Michael J. Parker, Francesca Dominici, Nigel Shadbolt, Marc A. Suchard, Oliver Ratmann, Seth R. Flaxman, Edward C. Holmes, Manuel Gomez-Rodriguez, Bernhard Schölkopf, Christl A. Donnelly, Oliver G. Pybus, Simon Cauchemez, Samir Bhatt

Nat., February, 2025

2023

Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model.

Shozen Dan, Yu Chen, Yining Chen, Mélodie Monod, Veronika K. Jaeger, Samir Bhatt, André Karch, Oliver Ratmann

PLoS Comput. Biol., 2023

2019

Phylogenies from dynamic networks.

Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn

PLoS Comput. Biol., 2019

2012

Phylodynamic Inference and Model Assessment with Approximate Bayesian Computation: Influenza as a Case Study.

Oliver Ratmann, Gé Donker, Adam Meijer, Christophe Fraser, Katia Koelle

PLoS Comput. Biol., 2012

2011

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series.

David A. Rasmussen, Oliver Ratmann, Katia Koelle

PLoS Comput. Biol., 2011

2008

FunCat functional inference with belief propagation and feature integration.

Dimitrij Surmeli, Oliver Ratmann, Hans-Werner Mewes, Igor V. Tetko

Comput. Biol. Chem., 2008

2007

Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of <i>H. pylori</i> and <i>P. falciparum</i>.

Oliver Ratmann, Ole Jørgensen, Trevor Hinkley, Michael P. H. Stumpf, Sylvia Richardson, Carsten Wiuf

PLoS Comput. Biol., 2007