Orcun Goksel

Orcid: 0000-0002-8639-7373

Affiliations:
  • ETH Zurich, Computer Vision Lab, Switzerland


According to our database1, Orcun Goksel authored at least 115 papers between 2005 and 2024.

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Bibliography

2024
Multi-Scale Feature Alignment for Continual Learning of Unlabeled Domains.
IEEE Trans. Medical Imaging, July, 2024

HDRfeat: A feature-rich network for high dynamic range image reconstruction.
Pattern Recognit. Lett., 2024

Generative feature-driven image replay for continual learning.
Image Vis. Comput., 2024

Joint semi-supervised and contrastive learning enables zero-shot domain-adaptation and multi-domain segmentation.
CoRR, 2024

2023
Weakly supervised joint whole-slide segmentation and classification in prostate cancer.
Medical Image Anal., October, 2023

Generative appearance replay for continual unsupervised domain adaptation.
Medical Image Anal., October, 2023

Unpaired Translation from Semantic Label Maps to Images by Leveraging Domain-Specific Simulations.
CoRR, 2023

Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains.
CoRR, 2023

2022
Hierarchical graph representations in digital pathology.
Medical Image Anal., 2022

Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images.
Proceedings of the Computer Vision - ECCV 2022, 2022

2021
Hemodynamic response to sensory stimulation in mice: Comparison between functional ultrasound and optoacoustic imaging.
NeuroImage, 2021

Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy.
Nat. Mach. Intell., 2021

Frequency-dependent attenuation reconstruction with an acoustic reflector.
Medical Image Anal., 2021

Reducing annotation effort in digital pathology: A Co-Representation learning framework for classification tasks.
Medical Image Anal., 2021

Active learning for segmentation based on Bayesian sample queries.
Knowl. Based Syst., 2021

Match What Matters: Generative Implicit Feature Replay for Continual Learning.
CoRR, 2021

Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps.
CoRR, 2021

Hierarchical Cell-to-Tissue Graph Representations for Breast Cancer Subtyping in Digital Pathology.
CoRR, 2021

Learning ultrasound rendering from cross-sectional model slices for simulated training.
Int. J. Comput. Assist. Radiol. Surg., 2021

Speed-of-sound imaging using diverging waves.
Int. J. Comput. Assist. Radiol. Surg., 2021

IJCARS - IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021 - Part 1.
Int. J. Comput. Assist. Radiol. Surg., 2021

Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Quantifying Explainers of Graph Neural Networks in Computational Pathology.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2021

2020
Computational Analysis of Subscapularis Tears and Pectoralis Major Transfers on Muscular Activity.
CoRR, 2020

Towards Explainable Graph Representations in Digital Pathology.
CoRR, 2020

Training Variational Networks with Multi-Domain Simulations: Speed-of-Sound Image Reconstruction.
CoRR, 2020

Deep Network for Scatterer Distribution Estimation for Ultrasound Image Simulation.
CoRR, 2020

Delineating Bone Surfaces in B-Mode Images Constrained by Physics of Ultrasound Propagation.
CoRR, 2020

GramGAN: Deep 3D Texture Synthesis From 2D Exemplars.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

Deep Image Translation for Enhancing Simulated Ultrasound Images.
Proceedings of the Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis, 2020

HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Graphs in Biomedical Image Analysis, 2020

Reinforcement Learning of Musculoskeletal Control from Functional Simulations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Mitosis Detection Under Limited Annotation: A Joint Learning Approach.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019
Speed-of-Sound Imaging Based on Reflector Delineation.
IEEE Trans. Biomed. Eng., 2019

High-Quality Immunohistochemical Stains Through Computational Assay Parameter Optimization.
IEEE Trans. Biomed. Eng., 2019

Weighted mean curvature.
Signal Process., 2019

Acoustic Field Characterization of Medical Array Transducers Based on Unfocused Transmits and Single-Plane Hydrophone Measurements.
Sensors, 2019

Ultrasound simulation with animated anatomical models and on-the-fly fusion with real images via path-tracing.
Comput. Graph., 2019

Ultrasound simulation with deformable and patient-specific scatterer maps.
Int. J. Comput. Assist. Radiol. Surg., 2019

Extending pretrained segmentation networks with additional anatomical structures.
Int. J. Comput. Assist. Radiol. Surg., 2019

A deep learning framework for context-aware mitotic activity estimation in whole slide images.
Proceedings of the Medical Imaging 2019: Digital Pathology, 2019

Deep Variational Networks with Exponential Weighting for Learning Computed Tomography.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Attenuation Imaging with Pulse-Echo Ultrasound Based on an Acoustic Reflector.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Implicit Modeling With Uncertainty Estimation For Intravoxel Incoherent Motion Imaging.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Siamese Networks With Location Prior for Landmark Tracking in Liver Ultrasound Sequences.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Scatgan for Reconstruction of Ultrasound Scatterers Using Generative Adversarial Networks.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

2018
Real-Time FEM-Based Registration of 3-D to 2.5-D Transrectal Ultrasound Images.
IEEE Trans. Medical Imaging, 2018

Robust Reconstruction of Elasticity Using Ultrasound Imaging and Multi-Frequency Excitations.
IEEE Trans. Medical Imaging, 2018

Image-Based Reconstruction of Tissue Scatterers Using Beam Steering for Ultrasound Simulation.
IEEE Trans. Medical Imaging, 2018

Generative Adversarial Networks for MR-CT Deformable Image Registration.
CoRR, 2018

Realistic Ultrasound Simulation of Complex Surface Models Using Interactive Monte-Carlo Path Tracing.
Comput. Graph. Forum, 2018

FEM-based elasticity reconstruction using ultrasound for imaging tissue ablation.
Int. J. Comput. Assist. Radiol. Surg., 2018

Registration of 3D freehand ultrasound to a bone model for orthopedic procedures of the forearm.
Int. J. Comput. Assist. Radiol. Surg., 2018

Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging.
Proceedings of the Machine Learning for Medical Image Reconstruction, 2018

A Structure-Aware Convolutional Neural Network for Skin Lesion Classification.
Proceedings of the OR 2.0 Context-Aware Operating Theaters, Computer Assisted Robotic Endoscopy, Clinical Image-Based Procedures, - and - Skin Image Analysis, 2018

Framework for Fusion of Data- and Model-Based Approaches for Ultrasound Simulation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Active Learning for Segmentation by Optimizing Content Information for Maximal Entropy.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Learn the New, Keep the Old: Extending Pretrained Models with New Anatomy and Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2017
Isotropic Total Variation Regularization of Displacements in Parametric Image Registration.
IEEE Trans. Medical Imaging, 2017

Consistent reconstruction of 4D fetal heart ultrasound images to cope with fetal motion.
Int. J. Comput. Assist. Radiol. Surg., 2017

Robust motion tracking in liver from 2D ultrasound images using supporters.
Int. J. Comput. Assist. Radiol. Surg., 2017

Interactive segmentation in MRI for orthopedic surgery planning: bone tissue.
Int. J. Comput. Assist. Radiol. Surg., 2017

Comparison of texture synthesis methods for content generation in ultrasound simulation for training.
Proceedings of the Medical Imaging 2017: Image-Guided Procedures, 2017

Computational Immunohistochemistry: Recipes for Standardization of Immunostaining.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Interpreting Data from Scanned Tables.
Proceedings of the 12th International Workshop on Graphics Recognitio, 2017

VISCERAL Anatomy Benchmarks for Organ Segmentation and Landmark Localization: Tasks and Results.
Proceedings of the Cloud-Based Benchmarking of Medical Image Analysis, 2017

2016
Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks.
IEEE Trans. Medical Imaging, 2016

Automatic Measurement of Venous Pressure Using B-Mode Ultrasound.
IEEE Trans. Biomed. Eng., 2016

Herding Generalizes Diverse M -Best Solutions.
CoRR, 2016

Monte-Carlo Ray-Tracing for Realistic Interactive Ultrasound Simulation.
Proceedings of the 6th Eurographics Workshop on Visual Computing for Biology and Medicine, 2016

Automatic Segmentation of Abdominal MRI Using Selective Sampling and Random Walker.
Proceedings of the Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging, 2016

4D Reconstruction of Fetal Heart Ultrasound Images in Presence of Fetal Motion.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Hand-Held Sound-Speed Imaging Based on Ultrasound Reflector Delineation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Graphical Modeling of Ultrasound Propagation in Tissue for Automatic Bone Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Image-Based PSF Estimation for Ultrasound Training Simulation.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2016

PURE: Panoramic Ultrasound Reconstruction by Seamless Stitching of Volumes.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2016

Temporal Prediction of Respiratory Motion Using a Trained Ensemble of Forecasting Methods.
Proceedings of the Medical Imaging and Augmented Reality - 7th International Conference, 2016

Analysis of excitation frequency in elasticity reconstruction using the FEM inverse-problem.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Imaging of sliding visceral interfaces during breathing.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Model-based compensation of tissue deformation during data acquisition for interpolative ultrasound simulation.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Mobile Ultrasound Imaging on Heterogeneous Multi-Core Platforms.
Proceedings of the 14th ACM/IEEE Symposium on Embedded Systems for Real-Time Multimedia, 2016

2015
Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions.
IEEE Trans. Medical Imaging, 2015

Thermal expansion imaging for monitoring lesion depth using M-mode ultrasound during cardiac RF ablation: in vitro study.
Int. J. Comput. Assist. Radiol. Surg., 2015

Unsupervised detection of local errors in image registration.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Overview of the VISCERAL Challenge at ISBI 2015.
Proceedings of the VISCERAL Anatomy3 Organ Segmentation Challenge co-located with IEEE International Symposium on Biomedical Imaging (ISBI 2015), 2015

Compliance boundary conditions for simulating deformations in a limited target region.
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Scatterer reconstruction and parametrization of homogeneous tissue for ultrasound image simulation.
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2014
Simultaneous Segmentation and Multiresolution Nonrigid Atlas Registration.
IEEE Trans. Image Process., 2014

Registration Fusion Using Markov Random Fields.
Proceedings of the Biomedical Image Registration - 6th International Workshop, 2014

Auxiliary anatomical labels for joint segmentation and atlas registration.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Detection and correction of inconsistency-based errors in non-rigid registration.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Total Variation Regularization of Displacements in Parametric Image Registration.
Proceedings of the Abdominal Imaging. Computational and Clinical Applications, 2014

Multi-atlas Segmentation and Landmark Localization in Images with Large Field of View.
Proceedings of the Medical Computer Vision: Algorithms for Big Data, 2014

Vessel tracking for ultrasound-based venous pressure measurement.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
Mesh Adaptation for Improving Elasticity Reconstruction Using the FEM Inverse Problem.
IEEE Trans. Medical Imaging, 2013

Prostate Brachytherapy Training With Simulated Ultrasound and Fluoroscopy Images.
IEEE Trans. Biomed. Eng., 2013

Estimation of atlas-based segmentation outcome: Leveraging information from unsegmented images.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Deformable haptic model generation through manual exploration.
Proceedings of the 2013 World Haptics Conference, 2013

Accuracy improvement in Cranio-Maxillofacial soft tissue simulation using a muscle embedded meshing approach.
Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012
Deformable prostate registration from MR and TRUS images using surface error driven FEM models.
Proceedings of the Medical Imaging 2012: Image-Guided Procedures, 2012

Semi-supervised Segmentation Using Multiple Segmentation Hypotheses from a Single Atlas.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2012

2011
Haptic Simulator for Prostate Brachytherapy with Simulated Needle and Probe Interaction.
IEEE Trans. Haptics, 2011

Image-Based Variational Meshing.
IEEE Trans. Medical Imaging, 2011

Haptic simulation of needle and probe interaction with tissue for prostate brachytherapy training.
Proceedings of the IEEE World Haptics Conference, 2011

2010
Haptic Simulator for Prostate Brachytherapy with Simulated Ultrasound.
Proceedings of the Biomedical Simulation, 5th International Symposium, 2010

2009
B-Mode Ultrasound Image Simulation in Deformable 3-D Medium.
IEEE Trans. Medical Imaging, 2009

3D Prostate Segmentation in Ultrasound Images Based on Tapered and Deformed Ellipsoids.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

High-Quality Model Generation for Finite Element Simulation of Tissue Deformation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

2007
Real-Time Synthesis of Image Slices in Deformed Tissue from Nominal Volume Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

2006
A Comparison of Needle Bending Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

2005
3D Needle-Tissue Interaction Simulation for Prostate Brachytherapy.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005


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