Akinori Sarai

According to our database1, Akinori Sarai authored at least 30 papers between 1998 and 2012.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Analysis of the relationships between evolvability, thermodynamics, and the functions of intrinsically disordered proteins/regions.
Computational Biology and Chemistry, 2012

Prediction of dinucleotide-specific RNA-binding sites in proteins.
BMC Bioinformatics, 2011

CCRXP: exploring clusters of conserved residues in protein structures.
Nucleic Acids Research, 2010

Proteochemometric Recognition of Stable Kinase Inhibition Complexes Using Topological Autocorrelation and Support Vector Machines.
Journal of Chemical Information and Modeling, 2010

Recognition of Drug-Target Interaction Patterns using Genetic Algorithm-optimized Bayesian-regularized Neural Networks and Support Vector Machines.
Proceedings of the IEEE International Conference on Systems, 2009

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site.
BMC Bioinformatics, 2007

ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions.
Nucleic Acids Research, 2006

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition.
Nucleic Acids Research, 2006

Dimensionality of amino acid space and solvent accessibility prediction with neural networks.
Computational Biology and Chemistry, 2006

Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

The Diamond STING server.
Nucleic Acids Research, 2005

Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism.
J. Bioinformatics and Computational Biology, 2005

PSSM-based prediction of DNA binding sites in proteins.
BMC Bioinformatics, 2005

ProTherm, version 4.0: thermodynamic database for proteins and mutants.
Nucleic Acids Research, 2004

Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins.
Nucleic Acids Research, 2004

ASAView: Database and tool for solvent accessibility representation in proteins.
BMC Bioinformatics, 2004

Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana.
Bioinformatics, 2004

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
Bioinformatics, 2004

Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
Bioinformatics, 2003

ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0.
Nucleic Acids Research, 2002

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations.
Nucleic Acids Research, 2001

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.
Nucleic Acids Research, 2001

Thermodynamic database for protein-nucleic acid interactions (ProNIT).
Bioinformatics, 2001

ORI-GENE: gene classification based on the evolutionary tree.
Bioinformatics, 2001

ProTherm, version 2.0: thermodynamic database for proteins and mutants.
Nucleic Acids Research, 2000

Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction.
Journal of Computational Chemistry, 2000

ProTherm: Thermodynamic Database for Proteins and Mutants.
Nucleic Acids Research, 1999

Methods for Predicting Target Sites of Transcription Factors.
Proceedings of the German Conference on Bioinformatics, 1999

3DinSight: an integrated relational database and search tool for the structure, function and properties of biomolecules.
Bioinformatics, 1998