Stefano Beretta

According to our database1, Stefano Beretta authored at least 33 papers between 2011 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2020
γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites.
Bioinform., 2020

2019
Network Properties.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Graph Theory and Definitions.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Algorithms for Strings and Sequences: Pairwise Alignment.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era.
Quant. Biol., 2019

Parallel Computing in Deep Learning: Bioinformatics Case Studiesa.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

Comparing Deep and Machine Learning Approaches in Bioinformatics: A miRNA-Target Prediction Case Study.
Proceedings of the Computational Science - ICCS 2019, 2019

2018
Improving eQTL Analysis Using a Machine Learning Approach for Data Integration: A Logistic Model Tree Solution.
J. Comput. Biol., 2018

Learning the Structure of Bayesian Networks: A Quantitative Assessment of the Effect of Different Algorithmic Schemes.
Complex., 2018

A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP.
Complex., 2018

ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
BMC Bioinform., 2018

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
BMC Bioinform., 2018

Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

2017
A quantitative assessment of the effect of different algorithmic schemes to the task of learning the structure of Bayesian Networks.
CoRR, 2017

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites.
BMC Bioinform., 2017

Low-Power Architectures for miRNA-Target Genome Wide Analysis.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

Rank miRNA: a web tool for identifying polymorphisms altering miRNA target sites.
Proceedings of the International Conference on Computational Science, 2017

Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext.
Proceedings of the Algorithms for Computational Biology, 2017

2016
Corrigendum to "Parameterized tractability of the maximum-duo preservation string mapping problem" [Theoret. Comput. Sci. 646(2016) 16-25].
Theor. Comput. Sci., 2016

Parameterized tractability of the maximum-duo preservation string mapping problem.
Theor. Comput. Sci., 2016

Correcting Gene Trees by Leaf Insertions: Complexity and Approximation.
Electron. Notes Theor. Comput. Sci., 2016

A Machine Learning Approach for the Integration of miRNA-Target Predictions.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

Combining Bayesian Approaches and Evolutionary Techniques for the Inference of Breast Cancer Networks.
Proceedings of the 8th International Joint Conference on Computational Intelligence, 2016

9<sup>th</sup> Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2016.
Proceedings of the International Conference on Computational Science 2016, 2016

2015
Correcting gene tree by removal and modification: Tractability and approximability.
J. Discrete Algorithms, 2015

Covering Pairs in Directed Acyclic Graphs.
Comput. J., 2015

8<sup>th</sup> Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2015.
Proceedings of the International Conference on Computational Science, 2015

2014
Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs.
J. Comput. Biol., 2014

Further Steps in TANGO: improved taxonomic assignment in metagenomics.
Bioinform., 2014

Gene Tree Correction by Leaf Removal and Modification: Tractability and Approximability.
Proceedings of the Language, Life, Limits - 10th Conference on Computability in Europe, 2014

2013
A hybrid genetic algorithm for the repetition free longest common subsequence problem.
Oper. Res. Lett., 2013

2012
Reconstructing isoform graphs from RNA-Seq data.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Predicting Variants of Alternative Splicing from NGS data without the Genome
CoRR, 2011


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