Stephen H. Bryant

Affiliations:
  • National Center for Biotechnology Information, Bethesda, USA


According to our database1, Stephen H. Bryant authored at least 77 papers between 1995 and 2020.

Collaborative distances:

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Bibliography

2020
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.
Bioinform., 2020

2019
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions.
Briefings Bioinform., 2019

2018
A new chemoinformatics approach with improved strategies for effective predictions of potential drugs.
J. Cheminformatics, 2018

2017
PubChem BioAssay: 2017 update.
Nucleic Acids Res., 2017

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Nucleic Acids Res., 2017

Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge.
J. Cheminformatics, 2017

Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites.
Bioinform., 2017

2016
PubChem Substance and Compound databases.
Nucleic Acids Res., 2016

Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets.
J. Cheminformatics, 2016

Cheminformatics analysis of the AR agonist and antagonist datasets in PubChem.
J. Cheminformatics, 2016

Literature information in PubChem: associations between PubChem records and scientific articles.
J. Cheminformatics, 2016

Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold.
J. Comput. Aided Mol. Des., 2016

2015
CDD: NCBI's conserved domain database.
Nucleic Acids Res., 2015

PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem.
Nucleic Acids Res., 2015

Target enhanced 2D similarity search by using explicit biological activity annotations and profiles.
J. Cheminformatics, 2015

PubChem structure-activity relationship (SAR) clusters.
J. Cheminformatics, 2015

PubChem atom environments.
J. Cheminformatics, 2015

2014
PubChem BioAssay: 2014 update.
Nucleic Acids Res., 2014

MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res., 2014

Pathway Analysis for Drug Repositioning Based on Public Database Mining.
J. Chem. Inf. Model., 2014

2013
CDD: conserved domains and protein three-dimensional structure.
Nucleic Acids Res., 2013

Pharmacophore and 3D-QSAR Characterization of 6-Arylquinazolin-4-amines as Cdc2-like Kinase 4 (Clk4) and Dual Specificity Tyrosine-phosphorylation-regulated Kinase 1A (Dyrk1A) Inhibitors.
J. Chem. Inf. Model., 2013

PubChem3D: conformer ensemble accuracy.
J. Cheminformatics, 2013

PubChem: atom environments for molecule standardization.
J. Cheminformatics, 2013

2012
PubChem's BioAssay Database.
Nucleic Acids Res., 2012

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.
Nucleic Acids Res., 2012

Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2012

MMDB: 3D structures and macromolecular interactions.
Nucleic Acids Res., 2012

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis.
J. Cheminformatics, 2012

FSelector: a Ruby gem for feature selection.
Bioinform., 2012

Annotation of functional sites with the Conserved Domain Database.
Database J. Biol. Databases Curation, 2012

2011
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2011

CDD: a Conserved Domain Database for the functional annotation of proteins.
Nucleic Acids Res., 2011

Identifying Compound-Target Associations by Combining Bioactivity Profile Similarity Search and Public Databases Mining.
J. Chem. Inf. Model., 2011

Binary Classification of Aqueous Solubility Using Support Vector Machines with Reduction and Recombination Feature Selection.
J. Chem. Inf. Model., 2011

Automated annotation of chemical names in the literature with tunable accuracy.
J. Cheminformatics, 2011

PubChem3D: Biologically relevant 3-D similarity.
J. Cheminformatics, 2011

PubChem3D: Shape compatibility filtering using molecular shape quadrupoles.
J. Cheminformatics, 2011

PubChem3D: Similar conformers.
J. Cheminformatics, 2011

PubChem3D: Diversity of shape.
J. Cheminformatics, 2011

PubChem3D: Conformer generation.
J. Cheminformatics, 2011

PubChem3D: a new resource for scientists.
J. Cheminformatics, 2011

Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes.
Database J. Biol. Databases Curation, 2011

2010
An overview of the PubChem BioAssay resource.
Nucleic Acids Res., 2010

Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites.
Nucleic Acids Res., 2010

Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2010

The NCBI BioSystems database.
Nucleic Acids Res., 2010

Knowledge-based annotation of small molecule binding sites in proteins.
BMC Bioinform., 2010

State of the art: refinement of multiple sequence alignments.
BMC Bioinform., 2010

Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules.
Bioinform., 2010

2009
PubChem: a public information system for analyzing bioactivities of small molecules.
Nucleic Acids Res., 2009

Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2009

CDD: specific functional annotation with the Conserved Domain Database.
Nucleic Acids Res., 2009

The PubChem chemical structure sketcher.
J. Cheminformatics, 2009

Computational analysis of the cathepsin B inhibitors activities through LR-MMPBSA binding affinity calculation based on docked complex.
J. Comput. Chem., 2009

A novel method for mining highly imbalanced high-throughput screening data in PubChem.
Bioinform., 2009

A survey of across-target bioactivity results of small molecules in PubChem.
Bioinform., 2009

PubChem: The NIH Public Repository for Small Molecules and Biological Screening Results.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2008

Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem.
BMC Bioinform., 2008

2007
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2007

MMDB: annotating protein sequences with Entrez's 3D-structure database.
Nucleic Acids Res., 2007

CDD: a conserved domain database for interactive domain family analysis.
Nucleic Acids Res., 2007

Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space.
J. Chem. Inf. Model., 2007

2006
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2006

2005
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res., 2005

CDD: a Conserved Domain Database for protein classification.
Nucleic Acids Res., 2005

A structure-based method for protein sequence alignment.
Bioinform., 2005

2004
CD-Search: protein domain annotations on the fly.
Nucleic Acids Res., 2004

2003
CDD: a curated Entrez database of conserved domain alignments.
Nucleic Acids Res., 2003

MMDB: Entrez's 3D-structure database.
Nucleic Acids Res., 2003

2002
MMDB: Entrez's 3D-structure database.
Nucleic Acids Res., 2002

CDD: a database of conserved domain alignments with links to domain three-dimensional structure.
Nucleic Acids Res., 2002

2000
MMDB: 3D structure data in Entrez.
Nucleic Acids Res., 2000

Domain size distributions can predict domain boundaries.
Bioinform., 2000

1999
MMDB: Entrez's 3D structure database.
Nucleic Acids Res., 1999

1995
MMDB: An ASN.1 Specification for Macromolecular Structure.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995


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