Evan Bolton

According to our database, Evan Bolton authored at least 52 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database.

Antanas Vaitkus, Andrius Merkys, Thomas Sander, Miguel Quirós, Paul A. Thiessen, Evan E. Bolton, Saulius Grazulis

J. Cheminformatics, December, 2023

Database resources of the National Center for Biotechnology Information in 2023.

Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Catherine M. Farrell, Michael Feldgarden, Anna M. Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Adriana J. Malheiro, Aron Marchler-Bauer, Terence D. Murphy, Lon Phan, Shashikant Pujar, Sanjida H. Rangwala, Valerie A. Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry

Nucleic Acids Res., January, 2023

PubChem 2023 update.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton

Nucleic Acids Res., January, 2023

Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF.

Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

Database resources of the national center for biotechnology information.

Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher J. Lanczycki, Stacy Lathrop, Zhiyong Lu, Françoise Thibaud-Nissen, Terence D. Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry

Nucleic Acids Res., 2022

CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community.

Andrea Jacobs, Dustin Williams, Katherine Hickey, Nathan Patrick, Antony J. Williams, Stuart J. Chalk, Leah McEwen, Egon L. Willighagen, Martin Walker, Evan Bolton, Gabriel Sinclair, Adam Sanford

J. Chem. Inf. Model., 2022

2021

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Jeffrey Beck, Evan Bolton, Devon Bourexis, James R. Brister, Kathi Canese, Donald C. Comeau, Kathryn Funk, Sunghwan Kim, William Klimke, Aron Marchler-Bauer, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Nuala A. O'Leary, Lon Phan, Sanjida H. Rangwala, Valerie A. Schneider, Yuri Skripchenko, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry

Nucleic Acids Res., 2021

PubChem in 2021: new data content and improved web interfaces.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton

Nucleic Acids Res., 2021

Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag.

Emma Schymanski, Todor Kondic, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton

J. Cheminformatics, 2021

FAIR chemical structures in the Journal of Cheminformatics.

Emma Schymanski, Evan Bolton

J. Cheminformatics, 2021

InChI version 1.06: now more than 99.99% reliable.

Jonathan M. Goodman, Igor V. Pletnev, Paul A. Thiessen, Evan Bolton, Stephen R. Heller

J. Cheminformatics, 2021

Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem.

Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton

Frontiers Res. Metrics Anal., 2021

2020

Ten simple rules to run a successful BioHackathon.

Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jiménez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama

PLoS Comput. Biol., 2020

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Jeffrey Beck, J. Rodney Brister, Evan Bolton, Kathi Canese, Donald C. Comeau, Kathryn Funk, Anne Ketter, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Anatoliy Kuznetsov, Stacy Lathrop, Zhiyong Lu, Kelly M. McGarvey, Thomas L. Madden, Terence D. Murphy, Nuala A. O'Leary, Lon Phan, Valerie A. Schneider, Françoise Thibaud-Nissen, Barton W. Trawick, Kim D. Pruitt, James Ostell

Nucleic Acids Res., 2020

Plant Reactome: a knowledgebase and resource for comparative pathway analysis.

Sushma Naithani, Parul Gupta, Justin Preece, Peter D'Eustachio, Justin Elser, Priyanka Garg, Daemon A. Dikeman, Jason Kiff, Justin Cook, Andrew Olson, Sharon Wei, Marcela K. Tello-Ruiz, Antonio Fabregat Mundo, Alfonso Muñoz-Pomer Fuentes, Suhaib Mohammed, Tiejun Cheng, Evan Bolton, Irene Papatheodorou, Lincoln Stein, Doreen Ware, Pankaj Jaiswal

Nucleic Acids Res., 2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

F1000Research, 2020

CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView.

Asiyah Yu Lin, Stephan Gebel, Qingliang Leon Li, Sumit Madan, Johannes Darms, Evan Bolton, Barry Smith, Martin Hofmann-Apitius, Yongqun Oliver He, Alpha Tom Kodamullil

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2019

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell

Nucleic Acids Res., 2019

PubChem 2019 update: improved access to chemical data.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton

Nucleic Acids Res., 2019

PUG-View: programmatic access to chemical annotations integrated in PubChem.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton

J. Cheminformatics, 2019

Singleton Property Graph: Adding A Semantic Web Abstraction Layer to Graph Databases.

Vinh Nguyen, Hong Yung Yip, Harsh Thakkar, Qingliang Li, Evan Bolton, Olivier Bodenreider

Proceedings of the Blockchain enabled Semantic Web Workshop (BlockSW) and Contextualized Knowledge Graphs (CKG) Workshop co-located with the 18th International Semantic Web Conference, 2019

2018

An update on PUG-REST: RESTful interface for programmatic access to PubChem.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton

Nucleic Acids Res., 2018

PubChem chemical structure standardization.

Volker Hähnke, Sunghwan Kim, Evan Bolton

J. Cheminformatics, 2018

2016

PubChem Substance and Compound databases.

Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant

Nucleic Acids Res., 2016

Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2016

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.

Yannick Djoumbou, Roman Eisner, Craig Knox, Leonid L. Chepelev, Janna Hastings, Gareth I. Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart

J. Cheminformatics, 2016

Literature information in PubChem: associations between PubChem records and scientific articles.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant

J. Cheminformatics, 2016

Predicting drug target interactions using meta-path-based semantic network analysis.

Gang Fu, Ying Ding, Abhik Seal, Bin Chen, Yizhou Sun, Evan Bolton

BMC Bioinform., 2016

2015

PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem.

Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Stephen H. Bryant

Nucleic Acids Res., 2015

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Warren A. Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J. Mungall, Janos X. Binder, James Malone, Drashtti Vasant, Helen E. Parkinson, Lynn M. Schriml

Nucleic Acids Res., 2015

PubChem structure-activity relationship (SAR) clusters.

Sunghwan Kim, Lianyi Han, Bo Yu, Volker Hähnke, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2015

PubChem atom environments.

Volker Hähnke, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2015

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases.

Gang Fu, Colin R. Batchelor, Michel Dumontier, Janna Hastings, Egon L. Willighagen, Evan Bolton

J. Cheminformatics, 2015

On Reasoning with RDF Statements about Statements using Singleton Property Triples.

Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Michel Dumontier, Amit P. Sheth

CoRR, 2015

Exposing Provenance Metadata Using Different RDF Models.

Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2013

PubChem3D: conformer ensemble accuracy.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2013

PubChem: atom environments for molecule standardization.

Volker Hähnke, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2013

2012

PubChem's BioAssay Database.

Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han, Karen Karapetyan, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton, Asta Gindulyte, Stephen H. Bryant

Nucleic Acids Res., 2012

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye

Nucleic Acids Res., 2012

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2012

2011

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye

Nucleic Acids Res., 2011

Automated annotation of chemical names in the literature with tunable accuracy.

Jun D. Zhang, Lewis Y. Geer, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Biologically relevant 3-D similarity.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Shape compatibility filtering using molecular shape quadrupoles.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Similar conformers.

Evan Bolton, Sunghwan Kim, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Diversity of shape.

Evan Bolton, Sunghwan Kim, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Conformer generation.

Evan Bolton, Sunghwan Kim, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: a new resource for scientists.

Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant

J. Cheminformatics, 2011

2010

An overview of the PubChem BioAssay resource.

Yanli Wang, Evan Bolton, Svetlana Dracheva, Karen Karapetyan, Benjamin A. Shoemaker, Tugba O. Suzek, Jiyao Wang, Jewen Xiao, Jian Zhang, Stephen H. Bryant

Nucleic Acids Res., 2010

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye

Nucleic Acids Res., 2010

2009

The PubChem chemical structure sketcher.

Wolf-Dietrich Ihlenfeldt, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2009

2007

Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space.

Yulia V. Borodina, Evan Bolton, Fabien Fontaine, Stephen H. Bryant

J. Chem. Inf. Model., 2007