T. Ian Simpson

According to our database, T. Ian Simpson authored at least 16 papers between 2010 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Process-Supervised Multi-Agent Reinforcement Learning for Reliable Clinical Reasoning.

Chaeeun Lee, T. Michael Yates, Pasquale Minervini, T. Ian Simpson

CoRR, February, 2026

2025

GNN-Suite: a Graph Neural Network Benchmarking Framework for Biomedical Informatics.

Sebestyén Kamp, Giovanni Stracquadanio, T. Ian Simpson

CoRR, May, 2025

Community Detection in Multimodal Data: A Similarity Network Perspective.

Aidan Marnane, T. Ian Simpson

CoRR, February, 2025

KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports.

Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang

CoRR, January, 2025

An integrative network approach for longitudinal stratification in Parkinson's disease.

Barry Ryan, Riccardo E. Marioni, T. Ian Simpson

PLoS Comput. Biol., 2025

Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII - Task 3 competition.

Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez

Database J. Biol. Databases Curation, 2025

Understanding Gut-Brain Interplay in Scientific Literature: A Hybrid Approach from Classification to Generative LLM Reasoning.

Chaeeun Lee, Simona E. Doneva, Maria Juliana Rodriguez-Cubillos, Elisa Castagnari, Antoine D. Lain, Joram M. Posma, T. Ian Simpson

Proceedings of the Working Notes of the Conference and Labs of the Evaluation Forum, 2025

Multilingual and Nested Biomedical Named Entity Normalization via Candidate Retrieval and Lightweight Large Language Model Disambiguation.

Antoine D. Lain, Chaeeun Lee, Simona E. Doneva, Maria Juliana Rodriguez-Cubillos, Elisa Castagnari, T. Ian Simpson, Joram M. Posma

Proceedings of the Working Notes of the Conference and Labs of the Evaluation Forum, 2025

2024

The Ontoverse: Democratising Access to Knowledge Graph-based Data Through a Cartographic Interface.

Johannes Zimmermann, Dariusz Wiktorek, Thomas Meusburger, Miquel Monge-Dalmau, Antonio Fabregat, Alexander Jarasch, Günter Schmidt, Jorge S. Reis-Filho, T. Ian Simpson

CoRR, 2024

Multi-Omic Graph Diagnosis (MOGDx): a data integration tool to perform classification tasks for heterogeneous diseases.

Barry Ryan, Riccardo E. Marioni, T. Ian Simpson

Bioinform., 2024

Classification of Genetic Developmental Disorders in the Peer-Reviewed Literature using biomedical ontologies.

T. Michael Yates, T. Ian Simpson

Proceedings of the 15th International Conference on Biological and Biomedical Ontology (ICBO 2024) co-located with 14th International Conference on Formal Ontology in Information Systems (FOIS 2024), Enschede, The Netherlands, July 18, 2024

Comparative Analyses of Multilingual Drug Entity Recognition Systems for Clinical Case Reports In Cardiology.

Chaeeun Lee, T. Ian Simpson, Joram M. Posma, Antoine D. Lain

Proceedings of the Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2024), 2024

Edinburgh Clinical NLP at MEDIQA-CORR 2024: Guiding Large Language Models with Hints.

Aryo Gema, Chaeeun Lee, Pasquale Minervini, Luke Daines, T. Ian Simpson, Beatrice Alex

Proceedings of the 6th Clinical Natural Language Processing Workshop, 2024

2022

Creation and evaluation of full-text literature-derived, feature-weighted disease models of genetically determined developmental disorders.

Thabo M. Yates, A. Laine, Jennifer Campbell, David R. FitzPatrick, T. Ian Simpson

Database J. Biol. Databases Curation, 2022

2011

Bio: : Homology: : InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping.

Giuseppe Gallone, T. Ian Simpson, J. Douglas Armstrong, Andrew P. Jarman

BMC Bioinform., 2011

2010

Merged consensus clustering to assess and improve class discovery with microarray data.

T. Ian Simpson, J. Douglas Armstrong, Andrew P. Jarman

BMC Bioinform., 2010