Hongfei Lin

According to our database, Hongfei Lin authored at least 189 papers between 1999 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

Extracting Emotion Causes Using Learning to Rank Methods From an Information Retrieval Perspective.

Bo Xu, Hongfei Lin, Yuan Lin, Yufeng Diao, Liang Yang, Kan Xu

IEEE Access, 2019

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures.

Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier

IEEE Access, 2019

2018

Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods.

Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang

IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Exploring Answer Information for Question Classification in Community Question Answering.

Jian Wang, Hongfei Lin, Hualei Dong, Daping Xiong, Zhihao Yang

Multiple-Valued Logic and Soft Computing, 2018

A neural network approach to chemical and gene/protein entity recognition in patents.

Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin

J. Cheminformatics, 2018

An effective neural model extracting document level chemical-induced disease relations from biomedical literature.

Wei Zheng, Hongfei Lin, Zhiheng Li, Xiaoxia Liu, Zhengguang Li, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang

Journal of Biomedical Informatics, 2018

A hybrid model based on neural networks for biomedical relation extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Shaowu Zhang, Yuanyuan Sun, Liang Yang

Journal of Biomedical Informatics, 2018

Wavelet-denoising multiple echo state networks for multivariate time series prediction.

Meiling Xu, Min Han, Hongfei Lin

Inf. Sci., 2018

A document level neural model integrated domain knowledge for chemical-induced disease relations.

Wei Zheng, Hongfei Lin, Xiaoxia Liu, Bo Xu

BMC Bioinformatics, 2018

Bidirectional long short-term memory with CRF for detecting biomedical event trigger in FastText semantic space.

Yan Wang, Jian Wang, Hongfei Lin, Xiwei Tang, Shaowu Zhang, Lishuang Li

BMC Bioinformatics, 2018

SemaTyP: a knowledge graph based literature mining method for drug discovery.

Shengtian Sang, Zhihao Yang, Lei Wang, Xiaoxia Liu, Hongfei Lin, Jian Wang

BMC Bioinformatics, 2018

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Ziwei Zhou, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Bo Xu

BMC Bioinformatics, 2018

Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths.

Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier

Bioinformatics, 2018

An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition.

Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang

Bioinformatics, 2018

Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach.

Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang

Database, 2018

The Identification of the Emotionality of Metaphorical Expressions Based on a Manually Annotated Chinese Corpus.

Dongyu Zhang, Hongfei Lin, Puqi Zheng, Liang Yang, Shaowu Zhang

IEEE Access, 2018

Improving Pseudo-Relevance Feedback With Neural Network-Based Word Representations.

Bo Xu, Hongfei Lin, Yuan Lin, Liang Yang, Kan Xu

IEEE Access, 2018

Personality Predictions Based on User Behavior on the Facebook Social Media Platform.

Michael M. Tadesse, Hongfei Lin, Bo Xu, Liang Yang

IEEE Access, 2018

Ensemble of Neural Networks with Sentiment Words Translation for Code-Switching Emotion Detection.

Tianchi Yue, Chen Chen, Shaowu Zhang, Hongfei Lin, Liang Yang

Proceedings of the Natural Language Processing and Chinese Computing, 2018

Stock Market Trend Prediction Using Recurrent Convolutional Neural Networks.

Bo Xu, Dongyu Zhang, Shaowu Zhang, HengChao Li, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2018

A Normalized Encoder-Decoder Model for Abstractive Summarization Using Focal Loss.

Yunsheng Shi, Jun Meng, Jian Wang, Hongfei Lin, Yumeng Li

Proceedings of the Natural Language Processing and Chinese Computing, 2018

NLPCC 2018 Shared Task User Profiling and Recommendation Method Summary by DUTIR_9148.

Xiaoyu Chen, Jian Wang, Yuqi Ren, Tong Liu, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2018

WECA：A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition.

Yufeng Diao, Hongfei Lin, Di Wu, Liang Yang, Kan Xu, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Dongyu Zhang

Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

Chinese Emotion Commonsense Knowledge Base Construction and Its Application.

Liang Yang, Fengqing Zhou, Hongfei Lin, Jian Wang, Shaowu Zhang

Proceedings of the Chinese Lexical Semantics - 19th Workshop, 2018

DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition.

Ling Luo, Nan Li, Shuaichi Li, Zhihao Yang, Hongfei Lin

Proceedings of the Evaluation Tasks at the China Conference on Knowledge Graph and Semantic Computing (CCKS 2018), 2018

Extraction New Sentiment Words in Weibo Based on Relative Branch Entropy.

Liang Yang, Dongyu Zhang, Shaowu Zhang, Peng Fei, Hongfei Lin

Proceedings of the Information Retrieval - 24th China Conference, 2018

Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content.

Bo Xu, Xiufeng Shi, Zhehuan Zhao, Wei Zheng, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding.

Bo Xu, Yu Liu, Shuo Yu, Lei Wang, Lei Liu, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein Complexes Detection Based on Global Network Representation Learning.

Bo Xu, Kun Li, Xiaoxia Liu, Delong Liu, Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation.

Zhizheng Wang, Yuanyuan Sun, Yawen Guan, Yibin Zhang, Liang Yang, Kan Xu, Yijia Zhang, Hongfei Lin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery.

Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach.

Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

PC-SENE: A node embedding based method for protein complex detection.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms.

Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A multi-task learning based approach to biomedical entity relation extraction.

Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion.

Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Construction of a Chinese Corpus for the Analysis of the Emotionality of Metaphorical Expressions.

Dongyu Zhang, Hongfei Lin, Liang Yang, Shaowu Zhang, Bo Xu

Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics, 2018

2017

A multiple distributed representation method based on neural network for biomedical event extraction.

Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu

BMC Med. Inf. & Decision Making, 2017

Assembling Deep Neural Networks for Medical Compound Figure Detection.

Yuhai Yu, Hongfei Lin, Jiana Meng, Xiaocong Wei, Zhehuan Zhao

Information, 2017

Deep Transfer Learning for Modality Classification of Medical Images.

Yuhai Yu, Hongfei Lin, Jiana Meng, Xiaocong Wei, Hai Guo, Zhehuan Zhao

Information, 2017

A Convolution-LSTM-Based Deep Neural Network for Cross-Domain MOOC Forum Post Classification.

Xiaocong Wei, Hongfei Lin, Liang Yang, Yuhai Yu

Information, 2017

Convolutional neural networks for expert recommendation in community question answering.

Jian Wang, Jiqing Sun, Hongfei Lin, Hualei Dong, Shaowu Zhang

SCIENCE CHINA Information Sciences, 2017

An attention-based effective neural model for drug-drug interactions extraction.

Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang

BMC Bioinformatics, 2017

Low-Resource Cross-Domain Product Review Sentiment Classification Based on a CNN with an Auxiliary Large-Scale Corpus.

Xiaocong Wei, Hongfei Lin, Yuhai Yu, Liang Yang

Algorithms, 2017

Social Annotation for Query Expansion Learning from Multiple Expansion Strategies.

Yuan Lin, Bo Xu, Luying Li, Hongfei Lin, Kan Xu

Proceedings of the Social Media Processing - 6th National Conference, 2017

NLPCC 2017 Shared Task Social Media User Modeling Method Summary by DUTIR_923.

Dongzhen Wen, Liang Yang, HengChao Li, Kai Guo, Peng Fei, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2017

First Place Solution for NLPCC 2017 Shared Task Social Media User Modeling.

Lingfei Qian, Anran Wang, Yan Wang, Yuhang Huang, Jian Wang, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2017

Homographic Puns Recognition Based on Latent Semantic Structures.

Yufeng Diao, Liang Yang, Dongyu Zhang, Linhong Xu, Xiaochao Fan, Di Wu, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2017

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models.

Kai Guo, Hongfei Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Kan Xu

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Learning to Rank with Query-level Semi-supervised Autoencoders.

Bo Xu, Hongfei Lin, Yuan Lin, Kan Xu

Proceedings of the 2017 ACM on Conference on Information and Knowledge Management, 2017

Tripartite-Replicated Softmax Model for Document Representations.

Bo Xu, Hongfei Lin, Lin Wang, Yuan Lin, Kan Xu, Xiaocong Wei, Dong Huang

Proceedings of the Information Retrieval - 23rd China conference, 2017

Musical Query-by-Semantic-Description Based on Convolutional Neural Network.

Jing Qin, Hongfei Lin, Dongyu Zhang, Shaowu Zhang, Xiaocong Wei

Proceedings of the Information Retrieval - 23rd China conference, 2017

A hybrid protein-protein interaction triple extraction method for biomedical literature.

Zhehuan Zhao, Zhihao Yang, Cong Sun, Lei Wang, Hongfei Lin

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Biomedical event trigger detection based on bidirectional LSTM and CRF.

Yan Wang, Jian Wang, Hongfei Lin, Shaowu Zhang, Lishuang Li

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

A graph kernel based on context vectors for extracting drug-drug interactions.

Wei Zheng, Hongfei Lin, Zhehuan Zhao, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang

Journal of Biomedical Informatics, 2016

Assessment of learning to rank methods for query expansion.

Bo Xu, Hongfei Lin, Yuan Lin

JASIST, 2016

Combining local and global information for product feature extraction in opinion documents.

Liang Yang, Bin Liu, Hongfei Lin, Yuan Lin

Inf. Process. Lett., 2016

Granular transfer learning using type-2 fuzzy HMM for text sequence recognition.

Shichang Sun, Jian Yun, Hongfei Lin, Nanxun Zhang, Ajith Abraham, Hongbo Liu

Neurocomputing, 2016

A protein-protein interaction extraction approach based on deep neural network.

Zhehuan Zhao, Zhihao Yang, Hongfei Lin, Jian Wang, Song Gao

IJDMB, 2016

Biomedical event trigger detection based on convolutional neural network.

Jian Wang, Honglei Li, Yuan An, Hongfei Lin, Zhihao Yang

IJDMB, 2016

Detection and Extraction of Hot Topics on Chinese Microblogs.

Liang Yang, Hongfei Lin, Yuan Lin, Shengbo Liu

Cognitive Computation, 2016

A method for predicting protein complex in dynamic PPI networks.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu, Shengtian Sang

BMC Bioinformatics, 2016

Construction of dynamic probabilistic protein interaction networks for protein complex identification.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

BMC Bioinformatics, 2016

Improving biomedical information retrieval by linear combinations of different query expansion techniques.

Ahmed AbdoAziz Ahmed Abdulla, Hongfei Lin, Bo Xu, Santosh Kumar Banbhrani

BMC Bioinformatics, 2016

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang

Bioinformatics, 2016

Visual and Textual Sentiment Analysis of a Microblog Using Deep Convolutional Neural Networks.

Yuhai Yu, Hongfei Lin, Jiana Meng, Zhehuan Zhao

Algorithms, 2016

Generating User-oriented Text Summarization Based on Social Networks Using Topic Models.

Bo Xu, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang

Proceedings of the Social Media Processing - 5th National Conference, 2016

Predicting Best Answerers for New Questions: An Approach Leveraging Convolution Neural Networks in Community Question Answering.

Jian Wang, Jiqing Sun, Hongfei Lin, Hualei Dong, Shaowu Zhang

Proceedings of the Social Media Processing - 5th National Conference, 2016

Detecting Potential Adverse Drug Reactions from Health-Related Social Networks.

Bo Xu, Hongfei Lin, Mingzhen Zhao, Zhihao Yang, Jian Wang, Shaowu Zhang

Proceedings of the Natural Language Understanding and Intelligent Applications, 2016

DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations.

Honglei Li, Jianhai Zhang, Jian Wang, Hongfei Lin, Zhihao Yang

Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

Disease-specific protein complex detection in the human protein interaction network with a supervised learning method.

Ziwei Zhou, Yingyi Gui, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

ML-CNN: A novel deep learning based disease named entity recognition architecture.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Biomedical event extraction based on distributed representation and deep learning.

Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature.

Zhiheng Li, Zhihao Yang, Hongfei Lin, Jian Wang, Yingyi Gui, Yin Zhang, Lei Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks.

Xiaoxia Liu, Zhihao Yang, Hongfei Lin, Michael Simmons, Zhiyong Lu

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Patent Retrieval Based on Multiple Information Resources.

Kan Xu, Hongfei Lin, Yuan Lin, Bo Xu, Liang Yang, Shaowu Zhang

Proceedings of the Information Retrieval Technology, 2016

Learning to Rank with Likelihood Loss Functions.

Yuan Lin, Liang Yang, Bo Xu, Hongfei Lin, Kan Xu

Proceedings of the Information Retrieval Technology, 2016

2015

How we collaborate: characterizing, modeling and predicting scientific collaborations.

Xiaoling Sun, Hongfei Lin, Kan Xu, Kun Ding

Scientometrics, 2015

Group-enhanced ranking.

Yuan Lin, Hongfei Lin, Kan Xu, Ajith Abraham, Hongbo Liu

Neurocomputing, 2015

A social network model driven by events and interests.

Xiaoling Sun, Hongfei Lin, Kan Xu

Expert Syst. Appl., 2015

Integrating experimental and literature protein-protein interaction data for protein complex prediction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

BMC Genomics, 2015

Predicting User Relationship from Scratch.

Xiaoxia Liu, Hongfei Lin, Zhihao Yang

Proceedings of the Social Media Processing - 4th National Conference, 2015

A Cross-Domain Sentiment Classification Method Based on Extraction of Key Sentiment Sentence.

Shaowu Zhang, Huali Liu, Liang Yang, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing - 4th CCF Conference, 2015

Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering.

Hualei Dong, Jian Wang, Hongfei Lin, Bo Xu, Zhihao Yang

Proceedings of the Ninth International Conference on Frontier of Computer Science and Technology, 2015

Incorporating Sample Filtering into Subject-Based Ensemble Model for Cross-Domain Sentiment Classification.

Liang Yang, Shaowu Zhang, Hongfei Lin, Xianhui Wei

Proceedings of the Chinese Computational Linguistics and Natural Language Processing Based on Naturally Annotated Big Data, 2015

Deep neural network based protein-protein interaction extraction from biomedical literature.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Discover potential adverse drug reactions using the skip-gram model.

Mingzhen Zhao, Bo Xu, Hongfei Lin, Zhihao Yang, Jian Wang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Learning to rank for biomedical information retrieval.

Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Biomedical event trigger detection by dependency-based word embedding.

Jian Wang, Jianhai Zhang, Yuan An, Hongfei Lin, Zhihao Yang, Yijia Zhang, Yuanyuan Sun

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Learning to rank-based gene summary extraction.

Yue Shang, Huihui Hao, Jiajin Wu, Hongfei Lin

BMC Bioinformatics, 2014

Enhancing the accuracy of knowledge discovery: a supervised learning method.

Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang, Jian Wang

BMC Bioinformatics, 2014

Audio Retrieval Based on Manifold Ranking.

Jing Qin, Xinyue Liu, Hongfei Lin

Proceedings of the Sixth International Symposium on Parallel Architectures, 2014

GPQ: Directly Optimizing Q-measure based on Genetic Programming.

Yuan Lin, Hongfei Lin, Ping Zhang, Bo Xu

Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014

Data integration and supervised learning based protein complex detection method.

Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Deep graph search based disease related knowledge summarization from biomedical literature.

Xiaofang Wu, Zhihao Yang, Zhiheng Li, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods.

Xiaoxia Liu, Zhihao Yang, Ziwei Zhou, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li, Bo Xu

IEEE/ACM Trans. Comput. Biology Bioinform., 2013

Combating Web spam through trust-distrust propagation with confidence.

Xinyue Liu, You Wang, Shaoping Zhu, Hongfei Lin

Pattern Recognition Letters, 2013

Exploring Useful Features for Biomedical Event Trigger Detection.

Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li

Multiple-Valued Logic and Soft Computing, 2013

Topical community detection from mining user tagging behavior and interest.

Xiaoling Sun, Hongfei Lin

JASIST, 2013

Learning to rank using smoothing methods for language modeling.

Yuan Lin, Hongfei Lin, Kan Xu, Xiaoling Sun

JASIST, 2013

A Time-Sensitive Model for Microblog Retrieval.

Cunhui Shi, Bo Xu, Hongfei Lin, Qing Guo

Proceedings of the Natural Language Processing and Chinese Computing, 2013

Integrating multiple biomedical resources for protein complex prediction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Bo Xu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Predicting protein complexes in protein interaction networks: A supervised learning based method.

Fengying Yu, Zhihao Yang, Nan Tang, Jiajin Wu, Hongfei Lin, Jian Wang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Learning to rank based gene summary extraction.

Yue Shang, Hongfei Lin, Huihui Hao, Jiajin Wu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Enhancing the accuracy of knowledge discovery: A supervised learning method.

Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li

IEEE/ACM Trans. Comput. Biology Bioinform., 2012

An Improved HITS Algorithm Based on Page-query Similarity and Page Popularity.

Xinyue Liu, Hongfei Lin, Cong Zhang

JCP, 2012

An Attractive Force Model for Weighting Links in Query-Dependant Web Page Ranking.

Xinyue Liu, Hongfei Lin, Liguo Zhang

JCP, 2012

Mining a multilingual association dictionary from Wikipedia for cross-language information retrieval.

Zheng Ye, Jimmy Xiangji Huang, Ben He, Hongfei Lin

JASIST, 2012

Twitter part-of-speech tagging using pre-classification Hidden Markov model.

Shichang Sun, Hongbo Liu, Hongfei Lin, Ajith Abraham

Proceedings of the IEEE International Conference on Systems, Man, and Cybernetics, 2012

EMIR: A Novel Music Retrieval System for Mobile Devices Incorporating Analysis of User Emotion.

Lijuan Marissa Zhou, Hongfei Lin, Cathal Gurrin

Proceedings of the Advances in Multimedia Modeling - 18th International Conference, 2012

Transfer learning based on graph ranking.

Jiana Meng, Hongfei Lin

Proceedings of the 9th International Conference on Fuzzy Systems and Knowledge Discovery, 2012

Construction and Application of Chinese Emotional Corpus.

Liang Yang, Hongfei Lin

Proceedings of the Chinese Lexical Semantics - 13th Workshop, 2012

PPIExtractor: A protein-protein interaction Extractor for biomédical literature.

Zhihao Yang, Zhehuan Zhao, Yanpeng Li, Yuncui Hu, Hongfei Lin

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model.

Bo Xu, Hongfei Lin, Zhihao Yang, Kavishwar B. Wagholikar, Hongfang Liu

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

A syntactic rule-based method for automatic pathway information extraction from biomédical literature.

Yanhua Wang, Zhihao Yang, Hongfei Lin, Yanpeng Li

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Combining labeled and unlabeled data for biomédical event extraction.

Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Where Are You Settling Down: Geo-locating Twitter Users Based on Tweets and Social Networks.

Kejiang Ren, Shaowu Zhang, Hongfei Lin

Proceedings of the Information Retrieval Technology, 2012

Sells Out or Piles Up? A Sentiment Autoregressive Model for Predicting Sales Performance.

Xueni Li, Shaowu Zhang, Liang Yang, Hongfei Lin

Proceedings of the Information Retrieval Technology, 2012

Query Expansion Based on User Quality in Folksonomy.

Qing Guo, Wenfei Liu, Yuan Lin, Hongfei Lin

Proceedings of the Information Retrieval Technology, 2012

Feature Transformation Method Enhanced Vandalism Detection in Wikipedia.

Tianshu Chang, Hongfei Lin, Yuan Lin

Proceedings of the Information Retrieval Technology, 2012

2011

A Framework for Semisupervised Feature Generation and Its Applications in Biomedical Literature Mining.

Yanpeng Li, Xiaohua Hu, Hongfei Lin, Zhiahi Yang

IEEE/ACM Trans. Comput. Biology Bioinform., 2011

Query by Humming Systems Using Melody Matching Model Based on the Genetic Algorithm.

Jing Qin, Hongfei Lin, Xinyue Liu

JSW, 2011

Topic Detection with Hypergraph Partition Algorithm.

Xinyue Liu, Fenglong Ma, Hongfei Lin

JSW, 2011

Segmenting Webpage with Gomory-Hu Tree Based Clustering.

Xinyue Liu, Hongfei Lin, Ye Tian

JSW, 2011

Neighborhood hash graph kernel for protein-protein interaction extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Yanpeng Li

Journal of Biomedical Informatics, 2011

Finding a good query-related topic for boosting pseudo-relevance feedback.

Zheng Ye, Jimmy Xiangji Huang, Hongfei Lin

JASIST, 2011

Incorporating rich features to boost information retrieval performance: A SVM-regression based re-ranking approach.

Zheng Ye, Jimmy Xiangji Huang, Hongfei Lin

Expert Syst. Appl., 2011

Combining multiple disambiguation methods for gene mention normalization.

Ning Xia, Hongfei Lin, Zhihao Yang, Yanpeng Li

Expert Syst. Appl., 2011

Knowledge transfer based on feature representation mapping for text classification.

Jiana Meng, Hongfei Lin, Yanpeng Li

Expert Syst. Appl., 2011

Passage retrieval based hidden knowledge discovery from biomedical literature.

Ran Chen, Hongfei Lin, Zhihao Yang

Expert Syst. Appl., 2011

An improved spectral clustering algorithm based on local neighbors in kernel space.

Xinyue Liu, Xing Yong, Hongfei Lin

Comput. Sci. Inf. Syst., 2011

A two-stage feature selection method for text categorization.

Jiana Meng, Hongfei Lin, Yuhai Yu

Computers & Mathematics with Applications, 2011

Multiple kernel learning in protein-protein interaction extraction from biomedical literature.

Zhihao Yang, Nan Tang, Xiao Zhang, Hongfei Lin, Yanpeng Li, Zhiwei Yang

Artificial Intelligence in Medicine, 2011

DUTIR at TREC 2011 Chemistry Track.

Ping Zhang, Hongfei Lin, Jiajin Wu, Yuan Lin

Proceedings of The Twentieth Text REtrieval Conference, 2011

DUTIR at TREC 2011 Microblog Track.

Cunhui Shi, Kejiang Ren, Hongfei Lin, Shaowu Zhang

Proceedings of The Twentieth Text REtrieval Conference, 2011

DUTIR at the Session Track in TREC 2011.

Wenfei Liu, Hongfei Lin, Yunlong Ma, Tianshu Chang

Proceedings of The Twentieth Text REtrieval Conference, 2011

A hybrid PSO-Viterbi algorithm for HMMs parameters weighting in Part-of-Speech tagging.

Shichang Sun, Hongfei Lin, Hongbo Liu

Proceedings of the Third International Conference of Soft Computing and Pattern Recognition, 2011

Learning to rank using query-level regression.

Jiajin Wu, Zhihao Yang, Yuan Lin, Hongfei Lin, Zheng Ye, Kan Xu

Proceedings of the Proceeding of the 34th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2011

Social annotation in query expansion: a machine learning approach.

Yuan Lin, Hongfei Lin, Song Jin, Zheng Ye

Proceedings of the Proceeding of the 34th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2011

A Bayesian network approach to context sensitive query expansion.

Zheng Ye, Xiangji Huang, Hongfei Lin

Proceedings of the 2011 ACM Symposium on Applied Computing (SAC), TaiChung, Taiwan, March 21, 2011

Active Semi-supervised Spectral Clustering.

Xinyue Liu, Linlin Zong, Xianchao Zhang, Hongfei Lin

Proceedings of the Fourth International Symposium on Parallel Architectures, 2011

Selecting related terms in query-logs using two-stage SimRank.

Yunlong Ma, Hongfei Lin, Yuan Lin

Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

Learning to rank with cross entropy.

Yuan Lin, Hongfei Lin, Jiajin Wu, Kan Xu

Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity.

Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Learning to Rank by Optimizing Expected Reciprocal Rank.

Ping Zhang, Hongfei Lin, Yuan Lin, Jiajin Wu

Proceedings of the Information Retrieval Technology, 2011

2010

Corpus-based Extraction of Chinese Historical Term Translation Equivalents.

Xiuying Li, Chao Che, Xiaoxia Liu, Hongfei Lin, Rongpei Wang

Int. J. of Asian Lang. Proc., 2010

BioPPISVMExtractor: A protein-protein interaction extractor for biomedical literature using SVM and rich feature sets.

Zhihao Yang, Hongfei Lin, Yanpeng Li

Journal of Biomedical Informatics, 2010

Learning an enriched representation from unlabeled data for protein-protein interaction extraction.

Yanpeng Li, Xiaohua Hu, Hongfei Lin, Zhihao Yang

BMC Bioinformatics, 2010

Hypergraph Partition with Harmonic Average Top-N and PCA for Topic Detection.

Xinyue Liu, Fenglong Ma, Hongfei Lin, Hong Shen

Proceedings of the Third International Symposium on Parallel Architectures, 2010

A two-stage feature selection method for text categorization.

Jiana Meng, Hongfei Lin

Proceedings of the Seventh International Conference on Fuzzy Systems and Knowledge Discovery, 2010

Learning to rank with groups.

Yuan Lin, Hongfei Lin, Zheng Ye, Song Jin, Xiaoling Sun

Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010

Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature.

Zhihao Yang, Yuan Lin, Jiajin Wu, Nan Tang, Hongfei Lin, Yanpeng Li

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Ontology integration to identify protein complex in protein interaction networks.

Bo Xu, Hongfei Lin, Zhihao Yang

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Exploring Social Annotation Tags to Enhance Information Retrieval Performance.

Zheng Ye, Jimmy Xiangji Huang, Song Jin, Hongfei Lin

Proceedings of the Active Media Technology, 6th International Conference, 2010

Revisiting Rocchio's Relevance Feedback Algorithm for Probabilistic Models.

Zheng Ye, Ben He, Xiangji Huang, Hongfei Lin

Proceedings of the Information Retrieval Technology, 2010

A Revised SimRank Approach for Query Expansion.

Yunlong Ma, Hongfei Lin, Song Jin

Proceedings of the Information Retrieval Technology, 2010

Emotion Tag Based Music Retrieval Algorithm.

Jing Li, Hongfei Lin, Lijuan Marissa Zhou

Proceedings of the Information Retrieval Technology, 2010

K-means and Graph-based Approaches for Chinese Word Sense Induction Task.

Lisha Wang, Yanzhao Dou, Xiaoling Sun, Hongfei Lin

Proceedings of the CIPS-SIGHAN Joint Conference on Chinese Language Processing, 2010

2009

BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature.

Zhihao Yang, Hongfei Lin, Baodong Wu

Expert Syst. Appl., 2009

Uncertainty sampling-based active learning for protein-protein interaction extraction from biomedical literature.

Baojin Cui, Hongfei Lin, Zhihao Yang

Expert Syst. Appl., 2009

Incorporating rich background knowledge for gene named entity classification and recognition.

Yanpeng Li, Hongfei Lin, Zhihao Yang

BMC Bioinformatics, 2009

York University at TREC 2009: Relevance Feedback Track.

Zheng Ye, Xiangji Huang, Ben He, Hongfei Lin

Proceedings of The Eighteenth Text REtrieval Conference, 2009

DUTIR at TREC 2009: Chemical IR Track.

Song Jin, Zheng Ye, Hongfei Lin

Proceedings of The Eighteenth Text REtrieval Conference, 2009

A graph-based approach to mining multilingual word associations from wikipedia.

Zheng Ye, Xiangji Huang, Hongfei Lin

Proceedings of the 32nd Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2009

Study on question answering system for biomedical domain.

Bo Xu, Hongfei Lin, Baoyan Liu

Proceedings of the 2009 IEEE International Conference on Granular Computing, 2009

Query expansion based on folksonomy tag co-occurrence analysis.

Song Jin, Hongfei Lin, Sui Su

Proceedings of the 2009 IEEE International Conference on Granular Computing, 2009

Towards A Better Performance for Medical Image Retrieval Using An Integrated Approach.

Zheng Ye, Xiangji Huang, Hongfei Lin

Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009

An Integrated Approach for Medical Image Retrieval through Combining Textual and Visual Features.

Zheng Ye, Xiangji Huang, Qinmin Hu, Hongfei Lin

Proceedings of the Multilingual Information Access Evaluation II. Multimedia Experiments, 2009

Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction.

Yanpeng Li, Hongfei Lin, Zhihao Yang

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

A Boosting Approach for Learning to Rank Using SVD with Partially Labeled Data.

Yuan Lin, Hongfei Lin, Zhihao Yang, Sui Su

Proceedings of the Information Retrieval Technology, 2009

2008

Exploiting the contextual cues for bio-entity name recognition in biomedical literature.

Zhihao Yang, Hongfei Lin, Yanpeng Li

Journal of Biomedical Informatics, 2008

Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature.

Zhihao Yang, Hongfei Lin, Yanpeng Li

Computational Biology and Chemistry, 2008

DUTIR at TREC 2008 Relevance Feedback Track.

Xiaoling Sun, Yuan Lin, Hongfei Lin, Zhihao Yang

Proceedings of The Seventeenth Text REtrieval Conference, 2008

DUTIR at TREC 2008 Blog Track.

Jianmei Chen, Wei Guo, Fengming Pan, Fuyang Chang, Rui Song, Hongfei Lin

Proceedings of The Seventeenth Text REtrieval Conference, 2008

Research on Focal Figures-Oriented Sentimental Question Answering.

Qin Tang, Hongfei Lin, Rui Song

Proceedings of the ALPIT 2008, 2008

Automatic Opinion Analysis Based on SVM and Distance-Weighted Computing.

Wei Guo, Hongfei Lin

Proceedings of the ALPIT 2008, 2008

Enhancing Biomedical Named Entity Classification Using Terabyte Unlabeled Data.

Yanpeng Li, Hongfei Lin, Zhihao Yang

Proceedings of the Information Retrieval Technology, 2008

2007

DUTIR at TREC 2007 Genomics Track.

Zhihao Yang, Hongfei Lin, Baojin Cui, Yanpeng Li, Xiao Zhang

Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Blog Track.

Rui Song, Qin Tang, Daming Shi, Hongfei Lin, Zhihao Yang

Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Enterprise Track.

Jianmei Chen, Hui Ren, Linhong Xu, Hongfei Lin, Zhihao Yang

Proceedings of The Sixteenth Text REtrieval Conference, 2007

Incorporating Dictionary Features into Conditional Random Fields for Gene/Protein Named Entity Recognition.

Hongfei Lin, Yanpeng Li, Zhihao Yang

Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Two Phase Indexes Based Passage Retrieval in Biomedical Texts.

Ran Chen, Hongfei Lin, Zhihao Yang

Proceedings of the Bio-Inspired Computational Intelligence and Applications, 2007

Ontology-Driven Affective Chinese Text Analysis and Evaluation Method.

Linhong Xu, Hongfei Lin

Proceedings of the Affective Computing and Intelligent Interaction, 2007

2006

DUTIR at TREC 2006: Genomics and Enterprise Tracks.

Zhihao Yang, Hongfei Lin, Yanpeng Li, Linhong Xu, Yu Pan, Baoyan Liu

Proceedings of the Fifteenth Text REtrieval Conference, 2006

2005

TREC 2005 Genomics Track Experiments at DUTAI.

Zhihao Yang, Hongfei Lin, Yanpeng Li, Baoyan Liu, Ye Lu

Proceedings of the Fourteenth Text REtrieval Conference, 2005

1999

Example-Based Chinese Text Filtering Model.

Hongfei Lin, Xuegang Zhan, Tianshun Yao

Proceedings of the Internet Applications, 5th International Computer Science Conference, 1999